Protein

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Genbank accession
YP_009219521.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,94
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYKLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQIAGSTMTGDLGIVKLLYGGKAVFDPTGSSEINIGDVLKTFKINANGLKLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNTFSGTQNIQGDVNLLRLRNQNANNAQYIEGVNLDGSARWLVGISKNGSDAVQLYNNKYDSALTIASNVSVNKSLAITGQVQPSDFSNLDARYFTQTVANQRFAQLAANNNFTGTNTFSRNLLIISDSAALRLKNTVANAALYVKAEANDGSGKWYVGNGDNTPAVFISNYVYGSYLRLDNGHVAVNKDFRITGQVQPSDWANIDSRYIPAATLSNLPKLNVANTFVNVQTIVSNNEGLVLRNLTQGQPLYIRGVDTANVSRWWLGVGGPNSNVVTLNNSYSGTQIALEPSAIVANKNLAITGQVQPSNFSNLDARYFVKTQLLNQSLMTLSVDNLENPSGFNLGYSGFVRNNAVTSGLKELAIHVAHSNKTAAHARGISFVYGSNGLATFTYAYDKDGRYAGEAQLYTTDFKPTPSDIGAYTKAETDQKIAQAISDSTDLNKIYPVGIVTWFNSNVNPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKTTNTTGAHTHSVSGSTNTTGAHTHGYITGAQPSGTRGDWDSDGNRNTVQTGSAGNHSHSVSGTAASNGNHAHSVGIGAHSHTVSGNTGGTGSGSAFSVINQFYKLMAWVRTA
Physico‐chemical
properties
protein length:781 AA
molecular weight: 83631,40260 Da
isoelectric point:8,73413
aromaticity:0,08323
hydropathy:-0,32676

Domains

Domains [InterPro]
DC_1566
STR
60–781
DC_1566
IPR048388
ATT
159–247
IPR048388 G3DSA:6.20.80.10 IPR048388 IPR051934
G3DSA:6.20.80.10
STR
159–218
G3DSA:6.20.80.10 IPR048388 G3DSA:6.20.80.10 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003
YP_009219521.1
1 781
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 60-158 | ATT 159-247 | STR 248-274 | ATT 275-361 | STR 362-381 | ATT 382-467 | STR 468-781
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009219521.1
1 781
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,8279
Central domain 85 283 200 0,1725
C-terminal 284 781 497 0,7876
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-781

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JH2
[NCBI] 		1340750 Uroviricota > Caudoviricetes > Andersonviridae > Felixounavirus > Felixounavirus JH2
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009219521.1 [NCBI]
Genbank nucleotide accession
NC_029023.1 [NCBI]
CDS location
range 46317 -> 48662
strand -
CDS
ATGGCAGATTACAAGTTGAGTGAATTAAACTCAATCGACACAATCCGTTCAGATGACCTTCTTCATGTCAGGGTTAAAAAGAGACCTGAAATGCTAGGTGATGAAGACCGTCGAATGACCTATCAAGACTTCTTAGCGTCTTTTAAACTTGAGAGATTTGTTCAGATTGCTGGTAGTACTATGACGGGTGACTTAGGTATTGTTAAGTTACTTTATGGTGGTAAGGCAGTCTTTGACCCTACAGGTTCTTCTGAGATTAATATTGGGGATGTTTTAAAGACTTTTAAAATCAACGCAAATGGTCTTAAACTAACTATTGCAGATGCTTCAAGGTCGGCAACTGTTTATCATACTCTGAATAAGCCAAGCCCTAATGAGCTTGGTATGAGAACTAATGAAGAGAATGATGCAAGATATGCAAGGCTTGCTGTCACAAACACATTCTCTGGAACTCAGAACATTCAAGGTGATGTTAACTTACTTCGCCTTAGAAACCAAAATGCAAACAATGCACAATATATTGAAGGTGTAAACCTAGATGGTTCAGCTAGATGGTTGGTTGGTATTAGTAAAAATGGCTCTGATGCAGTGCAACTGTACAATAATAAATATGACTCAGCTTTGACTATTGCAAGCAATGTCTCTGTTAATAAGTCTTTAGCAATCACTGGTCAAGTTCAACCTTCTGACTTCTCTAACTTAGATGCTAGATACTTCACACAGACAGTTGCTAATCAGAGATTTGCACAGTTAGCTGCTAATAACAATTTCACTGGCACTAACACGTTTAGCAGAAACCTACTTATTATTAGTGACAGTGCTGCTTTAAGGTTGAAAAATACTGTAGCAAATGCTGCACTATACGTTAAAGCCGAAGCTAATGATGGTTCTGGTAAGTGGTATGTAGGAAATGGTGATAATACACCTGCTGTATTCATCAGCAACTATGTGTATGGTTCTTATCTTAGACTTGACAATGGGCATGTCGCAGTAAACAAGGACTTCAGAATCACTGGTCAAGTTCAACCTTCTGATTGGGCTAATATTGACTCTAGATATATTCCAGCAGCTACTTTGAGTAATCTCCCTAAACTTAATGTGGCAAACACTTTCGTGAATGTGCAGACTATCGTATCAAATAACGAAGGTTTAGTATTAAGAAACTTGACACAGGGGCAACCGCTATATATCCGTGGTGTGGATACCGCGAACGTATCGAGGTGGTGGTTAGGTGTAGGTGGCCCAAACTCTAATGTGGTAACCTTAAACAATAGTTACTCTGGTACTCAAATTGCCCTTGAACCATCAGCAATTGTTGCGAATAAGAATTTAGCAATCACTGGTCAAGTTCAACCTTCGAACTTTTCTAACTTAGATGCTAGATATTTTGTTAAAACTCAGTTATTAAACCAATCCTTAATGACATTATCTGTAGATAACCTTGAAAACCCTTCAGGGTTTAATCTTGGGTACTCAGGTTTTGTCAGAAACAATGCTGTTACTAGTGGACTGAAAGAGTTGGCAATTCATGTTGCTCACTCTAATAAGACTGCTGCACATGCAAGAGGAATCTCTTTTGTGTATGGCTCAAATGGACTGGCAACATTCACCTATGCCTATGACAAAGACGGCAGATATGCTGGGGAAGCACAGCTTTACACAACTGATTTTAAACCAACCCCTTCAGATATTGGTGCATACACTAAAGCTGAAACTGACCAGAAGATTGCACAGGCAATTAGTGACTCTACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACTTGGTTTAACAGCAATGTTAACCCTAATACAGCACTTCCTGGTCTAACTTGGACGTACCTCAACAATGGTGTTGGTAGAACTATCAGAATTGCAGCAGCAAACGGTTCAGATGTTGCTACAACAGGTGGTTCAGATTCTGTGACGTTAGCTGTTGGTAACTTACCTTCACACACGCATAGTTTCTCTGCGACAACCTCTAGCTTTGACTACGGTACTAAAACCACTAACACTACTGGTGCTCACACCCACTCAGTGAGTGGTTCAACGAATACAACAGGTGCTCATACACATGGTTATATTACTGGTGCGCAACCAAGTGGTACAAGGGGTGATTGGGATTCTGATGGTAACAGAAATACCGTACAAACGGGTAGTGCTGGGAATCACTCACACTCAGTAAGTGGTACTGCTGCATCAAATGGTAACCACGCTCACTCAGTTGGTATTGGTGCTCACAGCCACACAGTAAGTGGTAACACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTAATTAACCAGTTCTATAAGTTAATGGCTTGGGTGAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
98f8e27e10f0595d2a5f96ffd3709b99b199d756acd0d8bbe4be6bb5723ded8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7016
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequence of a broad host range bacteriophage infecting Escherichia coli shared high simialrity to Staphylococcus phage SA1 Nguyen,X., Tang,F., Bai,Q., Shen,C., Vo,T., Zhang,W. and Lu,C. 2024-06-23 — GenBank