Protein

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Genbank accession
XRL28089.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRVLFTKDDQGNIIDLGFAKGGSIDGNVIHNGNYNQTGDYTITGAISQKSGHFTTTGSITATGDVTAKSRLMTDIGEVLVRSNGTAHVRFQDLADGRERAIIYSQNRTGNTKQILNVRVQDYTNSTSNTFAFNGDGLFYAPSISGGTSVKSPVIYTNTVNTDSKNIGDYDISSLANNTPLAESETAINHLRVMRNAVGSGIFHEVKDNDGITWYTGDGLDTYLWSFTWSGGLKAGHSISVGTPGGNKGYSELGTASISLGDNDTGLKWHQDGYFQTVNNGTRTFTYGPTETQSLRKMVMGYSPDGILMTTPPTENYALATVVTYHDNNAYGDGQTLLGYYQGGNYHHYFRGKGTTNINTHGGLLVTPGDINVIGGSVNIDGINNSSTLLFRGNTTGASSVDNMTISVWGNTFTNPSVGNRKNVMEISDATSWMSYIQRLTTGEVEMNVNGSFESSGVTAGHRGVHTTGEISSGAVNALRIWNADYGVIFRRSENSLHIIPTAYGEGKNGNIGPLRPFRMDLDTGKVSIPNMDTTNLIMNPNGSIKFTGHGNGTELYGNQYGQAAPIYQEINNDSASAYIPIIKQKYLNGGIMWSMGTELNSGDFVIHRINAAGDENRIIKFDSNCVPHFPDNVLVGGDINMKGAMTFDAGRLGSRDYFKFNHWGDSNNARDNIIQLEDSQGAHFSTERTLATGAIKTRFFGETFTDGTLYLNQMNNSSERFSIRNWGNSEVGRAAVMEVGDSKGYHFYTERRTDNSLAFDVAGVFTVHGPTGITIKNSAGARHIWFRDDSDAEKSVIWATDEGILHIRNNYGGAVAHRFQGAMFKLNGRVPYAADQGIIRGEVSGGAYVDWRNRPAGLLLDCQQSVDSAHAIWKAVDWGRNYIAALDVHMPGNSNNTAAAILHVQDANYQFHASGEFHATGNGSFNDVYIRSDRRLKENIEDYIGNATDLIGKLKVKTYDKVKSLSDREIIGHEIGIIAQDLQEILPEAINISKIGNLDKPDEVLTISNSAVNALLIKAIQEMSEEIKELKTPFFTKIARKIGKYFKF
Physico‐chemical
properties
protein length:1082 AA
molecular weight: 117931,62530 Da
isoelectric point:6,11749
aromaticity:0,09150
hydropathy:-0,39935

Domains

Domains [InterPro]
DC_0538
STR
1–515
DC_0538 DC_0000
IPR048390
ATT
452–551
IPR048390 IPR030392
IPR030392
CHP
966–1023
IPR030392
XRL28089.1
1 1082
Architecture
STR
ATT
STR
STR 1-451 | ATT 452-551 | STR 554-1078 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRL28089.1
1 1082
Domain Start End Length (AA) Confidence
N-terminal 1 1027 1027 0,0372
Central domain 1028 1071 45 0,3695
C-terminal 1072 1082 10 0,1546
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1027
Central
1028-1071
C-terminal
1072-1082

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HMD-9
[NCBI] 		3411022 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRL28089.1 [NCBI]
Genbank nucleotide accession
PV287714 [NCBI]
CDS location
range 152509 -> 155757
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACTGCAGGAGCACGTCCTGCCGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGACGATCAAGGGAATATCATTGATCTGGGTTTTGCTAAGGGCGGTAGTATTGACGGGAATGTTATTCATAACGGTAACTACAACCAGACTGGCGATTACACTATAACCGGAGCTATTTCACAAAAGTCTGGACATTTTACTACTACCGGTAGTATAACAGCAACCGGTGATGTCACAGCAAAATCTCGCCTAATGACTGATATAGGCGAAGTTTTGGTACGTAGTAATGGTACCGCACATGTTCGATTCCAGGATTTGGCTGATGGACGCGAAAGAGCTATAATTTATTCTCAAAACCGTACTGGGAATACCAAGCAAATATTGAACGTTCGTGTTCAGGATTACACTAATTCAACATCTAATACTTTTGCATTCAACGGTGACGGTTTATTTTATGCCCCATCTATTTCCGGCGGAACATCAGTAAAATCTCCAGTAATTTATACCAATACTGTTAATACAGACAGTAAGAATATTGGCGATTACGATATATCTTCATTAGCAAATAACACTCCATTGGCAGAAAGCGAAACGGCTATTAACCACCTCCGTGTTATGCGAAATGCTGTAGGATCTGGTATATTCCATGAAGTTAAAGATAATGATGGAATAACTTGGTATACCGGAGATGGCTTAGACACTTATCTTTGGTCGTTTACCTGGTCTGGTGGATTGAAAGCGGGTCATTCTATTTCTGTTGGTACTCCTGGTGGCAATAAAGGATACTCTGAATTAGGGACTGCTTCAATTTCTCTTGGTGATAATGATACCGGGCTAAAATGGCATCAGGATGGATATTTCCAAACAGTAAACAACGGGACAAGAACTTTCACCTATGGCCCTACCGAAACACAAAGCCTTAGAAAAATGGTTATGGGTTATTCTCCGGACGGGATTCTTATGACAACGCCGCCGACAGAAAACTATGCATTAGCCACTGTTGTTACTTATCATGATAATAACGCGTATGGTGACGGTCAGACTCTTTTAGGATATTATCAAGGCGGTAATTATCATCACTATTTCCGCGGTAAGGGTACCACAAACATTAATACTCATGGCGGTTTGTTAGTTACTCCAGGTGATATTAATGTTATCGGTGGTTCGGTTAATATCGATGGTATAAATAATTCTTCTACCCTGCTATTTAGAGGCAACACGACCGGAGCTAGTTCAGTTGATAATATGACAATTTCCGTTTGGGGCAATACGTTTACTAATCCTAGTGTAGGTAATCGTAAAAACGTCATGGAAATTTCTGATGCAACTAGCTGGATGAGCTATATTCAAAGACTTACAACTGGTGAAGTAGAAATGAACGTTAACGGTTCATTTGAATCATCTGGTGTTACTGCTGGACATAGAGGAGTTCACACAACAGGCGAAATTTCATCCGGAGCAGTGAATGCGCTTCGCATTTGGAATGCAGATTATGGAGTCATTTTCCGTCGTTCAGAAAACAGTCTTCATATTATTCCGACTGCTTACGGTGAAGGTAAAAATGGAAATATCGGTCCACTTCGCCCGTTCCGTATGGACCTTGATACAGGTAAAGTAAGTATTCCTAATATGGATACTACTAATTTGATTATGAACCCAAATGGTTCTATTAAATTTACTGGTCATGGTAATGGTACCGAGCTGTATGGTAATCAGTATGGGCAAGCGGCACCGATTTATCAAGAAATTAATAATGATTCCGCTTCTGCTTATATTCCAATTATAAAACAGAAATACTTAAATGGCGGTATAATGTGGTCTATGGGAACAGAACTTAATTCCGGTGATTTTGTAATCCATAGAATTAATGCCGCCGGTGATGAAAACCGAATTATTAAATTTGATAGTAACTGCGTTCCGCATTTCCCGGATAACGTGCTGGTTGGCGGTGATATTAACATGAAAGGCGCGATGACTTTTGACGCCGGACGTTTAGGATCACGAGATTATTTTAAATTTAACCATTGGGGTGATAGTAATAATGCTCGTGATAACATCATCCAGTTAGAAGATAGTCAAGGCGCTCATTTTTCCACTGAACGTACTTTAGCGACTGGTGCAATTAAAACTCGTTTCTTTGGCGAAACATTTACTGATGGTACATTATACCTAAATCAGATGAATAATAGCTCTGAACGATTCTCTATCAGAAATTGGGGAAATTCAGAAGTTGGTCGCGCGGCAGTGATGGAAGTCGGTGATTCCAAAGGTTATCACTTCTATACGGAACGCAGGACAGATAATAGTTTGGCGTTTGATGTTGCTGGCGTTTTTACCGTGCATGGACCTACCGGGATCACTATCAAAAACTCTGCTGGTGCACGACATATCTGGTTTAGAGATGATAGCGATGCAGAAAAGTCTGTTATCTGGGCTACAGATGAGGGTATTTTACATATTCGCAATAACTATGGTGGAGCAGTTGCACATCGCTTCCAGGGCGCGATGTTTAAACTTAACGGACGTGTTCCTTATGCCGCAGATCAAGGAATTATTCGTGGTGAGGTTTCTGGCGGTGCTTATGTGGATTGGAGAAATCGCCCTGCTGGTTTGTTGCTTGACTGTCAACAAAGCGTTGATAGTGCTCATGCCATTTGGAAAGCGGTTGATTGGGGGCGTAACTACATCGCTGCTTTGGATGTTCATATGCCAGGTAATAGTAATAATACTGCAGCAGCGATTCTCCATGTTCAAGATGCTAATTATCAATTCCATGCAAGTGGAGAATTTCATGCCACTGGTAACGGAAGCTTTAACGATGTTTATATTCGATCAGACCGTCGCCTCAAAGAAAACATCGAAGATTATATAGGAAATGCAACTGATTTAATCGGTAAACTGAAAGTTAAAACCTACGATAAAGTTAAATCATTATCCGACCGTGAAATTATCGGTCATGAGATTGGCATTATCGCACAGGATTTACAAGAAATATTACCAGAAGCGATTAATATTTCGAAAATTGGCAATCTTGATAAACCAGACGAAGTTCTGACAATTTCTAACTCTGCTGTGAATGCTCTTTTAATTAAGGCCATTCAGGAAATGAGTGAAGAAATTAAAGAATTGAAAACGCCTTTCTTCACTAAAATTGCTCGCAAAATTGGTAAATACTTTAAATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ae0cf6848ed6bfb8b6ba933ad27f2306369da8e3043b52be6c9607a9c7b78741
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2817
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50