Protein

View in Explore
Genbank accession
XRM24114.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNELFSQGGKGSTGILTNKQAIARKFGVKQNEVVYFAVGVDLGGYKVIYDKTTQRAYSLPALPTGTTAVSLNEHAILIHSAGTVDLGELAATRREFVVLSDTFATGLVVNTRNELLFHNGVGYTYLGTLPVTITTGTNPVGNTDWKPQTDLNLREELAADFGYQLVPSVEKQRWLYAGDVRAFGVVGDGSDEASSLQLAINSGNVFVPPGMTVSHSQVNIPKGTIFTFGHGAGLTSLTANALNFVSESQFSLLSPAASGATSITLTSEVTGTGYTRALVIRTEDTSDAWYIANAQNPDVIGYQGESFLISSISGATVNLATALPWDLTTTNSIIYLIKGNATKFIGGILKNAASGSSYMYQSVGASLIEFHGTAFDYNGNGGSRHDNAYGVVYHNTTHTGRVGNGNIFFGYGSTDCTVTGTTHIGGTGGDAQIISYAGCRNIRTSLNILKPTANNGGIYFGAKSFDCNTHADYIKGGKYGVMGAFGAQRIVVDSLAADDQVSGAIFMEQCQNFTITNPSIRFVRTGAQTTAAILIKDCDYVTVDANVPVNTGANGYIVSMYSAPAYALTVRKNINITVKGTGSVYLTSPMTNFSIKDCLTSGGMTVYYANGTSTYGKVTRNSCRFLVAQSFQYCDIDSNTIVGDSDSEGIRLGGNCRWNNVYRNKVSGVTTAFFVNSAPANLYTNAFHDDNVIDYSTVTTFVSSQTGTTTPVTGVLNPAPVRNFFLPATGWQDSPTVKRTVSGWRHKGTTTGTASDWFTIPSSEA
Physico‐chemical
properties
protein length:765 AA
molecular weight: 81290,75400 Da
isoelectric point:6,36002
aromaticity:0,10065
hydropathy:-0,06092

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–94
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
DC_0352
STR
1–763
DC_0352
XRM24114.1
1 765
Architecture
ATT
STR
ATT 1-159 | STR 160-763 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM24114.1
1 765
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9927
Central domain 193 707 516 0,9778
C-terminal 708 765 57 0,9419
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-707
C-terminal
708-765

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage nithesis
[NCBI] 		3411982 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM24114.1 [NCBI]
Genbank nucleotide accession
PV252060.1 [NCBI]
CDS location
range 6122 -> 8419
strand +
CDS
ATGAACGAATTATTCTCTCAAGGTGGTAAAGGCTCTACTGGTATTCTTACCAATAAACAAGCCATTGCCCGTAAGTTTGGTGTTAAACAGAATGAAGTGGTCTACTTTGCTGTAGGTGTAGACTTAGGTGGTTACAAAGTTATTTACGATAAGACTACCCAGCGTGCTTACTCATTACCCGCACTCCCAACAGGAACTACTGCTGTAAGCCTCAATGAACATGCAATCCTGATTCATTCAGCAGGTACAGTTGATTTGGGGGAACTGGCTGCTACACGTAGAGAGTTCGTGGTCCTGTCTGACACGTTTGCTACTGGTTTGGTAGTGAATACACGAAATGAATTATTATTTCATAATGGAGTAGGTTATACCTACTTAGGTACTCTACCTGTAACAATTACCACAGGAACTAATCCTGTAGGTAACACAGATTGGAAACCACAGACTGACCTTAATTTACGGGAAGAATTAGCGGCTGACTTCGGTTATCAGCTAGTTCCGTCTGTGGAAAAGCAACGATGGCTTTACGCCGGGGACGTGCGTGCTTTTGGGGTTGTTGGTGATGGGTCTGATGAGGCATCTAGTTTGCAGTTAGCCATTAACTCGGGTAATGTTTTTGTTCCCCCGGGCATGACGGTTTCTCATTCACAAGTCAACATACCAAAAGGTACGATTTTTACTTTCGGTCATGGTGCTGGGTTGACATCATTGACTGCTAATGCTCTTAATTTCGTCAGCGAGAGCCAATTCAGCTTGCTTTCCCCTGCAGCTTCTGGAGCAACGTCCATCACATTAACATCTGAGGTGACAGGAACTGGGTATACCCGGGCTTTGGTAATACGCACTGAGGACACAAGTGACGCTTGGTATATCGCCAACGCACAGAATCCGGATGTAATCGGATACCAAGGTGAATCTTTTTTAATATCGTCCATATCAGGTGCTACTGTAAATTTAGCAACGGCTTTACCGTGGGACCTAACTACCACCAATTCGATTATTTATCTTATAAAAGGCAACGCTACTAAGTTCATCGGGGGAATCTTAAAAAATGCTGCGTCAGGGTCTAGCTACATGTACCAATCCGTGGGGGCTTCACTTATAGAGTTCCATGGTACTGCTTTTGATTATAATGGAAACGGCGGTTCAAGGCATGATAACGCGTACGGTGTGGTTTACCACAACACTACCCATACCGGGCGTGTCGGAAATGGTAATATATTTTTTGGTTATGGATCTACAGATTGTACTGTCACGGGTACGACCCACATTGGAGGGACCGGTGGGGATGCGCAAATAATATCTTACGCTGGCTGCCGTAACATCCGTACATCCCTTAACATCCTAAAACCTACAGCTAACAACGGGGGTATATATTTTGGTGCAAAAAGCTTCGACTGCAACACCCATGCTGATTATATTAAAGGCGGAAAGTATGGGGTTATGGGGGCATTTGGTGCTCAGCGTATTGTTGTGGACTCGCTGGCGGCAGACGACCAAGTATCAGGCGCTATCTTTATGGAGCAATGCCAGAACTTTACCATCACAAACCCGTCTATTAGATTCGTAAGGACTGGCGCTCAAACAACCGCTGCGATATTAATTAAGGACTGCGATTATGTGACAGTGGATGCAAATGTCCCTGTAAATACAGGGGCGAACGGGTATATAGTCAGTATGTATAGCGCTCCTGCATACGCCCTAACAGTTAGAAAAAATATAAACATTACGGTAAAAGGTACTGGCAGTGTATACCTTACTAGCCCTATGACCAATTTCTCGATTAAAGACTGTTTAACATCCGGCGGTATGACAGTTTACTACGCCAATGGTACGTCTACTTACGGCAAGGTTACGCGTAATAGTTGCCGGTTTTTAGTAGCTCAAAGTTTCCAATATTGTGACATAGATAGTAACACCATTGTGGGGGATTCTGATTCTGAGGGTATACGCCTTGGTGGTAACTGTAGATGGAACAACGTATATAGAAACAAGGTTAGTGGGGTTACTACGGCATTCTTCGTTAACTCAGCACCCGCAAATCTATACACGAATGCGTTTCATGATGATAACGTAATAGATTACTCAACAGTAACCACCTTCGTATCATCTCAGACTGGAACCACCACACCAGTTACTGGAGTGTTAAACCCCGCTCCAGTGAGGAATTTCTTTCTCCCGGCAACAGGTTGGCAGGATAGCCCTACGGTAAAAAGAACTGTTAGTGGCTGGAGGCATAAAGGCACTACAACAGGCACAGCGTCTGATTGGTTTACTATCCCCTCGTCAGAAGCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7af8526d36214190ee26ab9f1ec140d950340e33e2a2a8e253a85795410fe236
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7707
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Escherichia phage nithesis Imklin,N., Kvederaviciute,K., Aesomnuk,W., Arikit,S., Simoliunas,E. and Nasanit,R. 2022-01-10 — GenBank