Protein

View in Explore
Genbank accession
AUR82083.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATQVKHRRGTQSEIDNFTGALGEIVVNTTEEELVLNNGATQGGIPIPKKRNTVLSFDTLTLAVANTSLKAGYSVELKERTTGNGGGGKWDVVLASTVSPNTFNIVQCTGVPSLALVLRVEGDIDIKQFGAVGDGVTDDNAAINAAHEFARDLVGYNTVIVPPSESGSEYIFTQIKVYSKTTFKGEGGVLKLKDNTVTDVGLSYYPINNLGEDRVIYDGLIVEGNSANNPAPVVCDTITCTGFRSKVINCVLFNAVDSGVMFSGAIRAYCKNNYVENARDLCIYVNASVDGDLDESIVSNNICKGAPFGGIGIKRFAANCIVEGNTIDDCGNGITVEDFGGGSNPTNLQILNNSMRRIGYTQRGASVAERGISISRAENLIVSGNRVRDCSGNCILASNLSDSIISNNHLVGYTTDPAASGNNGIIASITPVSNVVVEGNVIKGVATRGIYFGDPTECQIVNNQVESVSSALRINASGSENIVTGNVLYGTGGLDVELFAGAVTVYKDNILKNGSTELAKYGVRTISAGQPFPDVSGFVALSPGEEVLHLADTSWWKSYGTGAGEWKRMTT
Physico‐chemical
properties
protein length:571 AA
molecular weight: 60214,75150 Da
isoelectric point:4,90165
aromaticity:0,06655
hydropathy:-0,04396

Domains

Domains [InterPro]
G3DSA:2.10.10.30
ATT
1–45
G3DSA:2.10.10.30 IPR011050 IPR007742
G3DSA:2.10.10.30
ATT
1–52
G3DSA:2.10.10.30 IPR012334 IPR006626 IPR006626 IPR006626
IPR041352
ATT
5–41
IPR041352 IPR006626 IPR039448
IPR006626
Unmapped
242–264
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
STR
346–515
IPR011050
DC_1886
RBD
383–571
DC_1886
AUR82083.1
1 571
Architecture
ATT
STR
RBD
ATT 1-52 | STR 121-515 | RBD 516-571
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR82083.1
1 571
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9861
Central domain 140 511 373 0,9880
C-terminal 512 571 59 0,9514
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-511
C-terminal
512-571

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.021.A._10N.222.51.F9
[NCBI] 		1881415 No lineage information
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR82083.1 [NCBI]
Genbank nucleotide accession
MG592403.1 [NCBI]
CDS location
range 21335 -> 23050
strand +
CDS
ATGGCTACTCAAGTAAAACATCGACGTGGTACACAGTCTGAAATAGACAATTTTACAGGTGCACTCGGTGAGATTGTGGTTAATACCACTGAAGAAGAATTGGTATTAAATAACGGTGCTACACAGGGTGGTATTCCTATCCCTAAAAAACGTAATACCGTTCTTAGTTTTGACACACTTACCCTCGCTGTTGCGAACACTTCCCTGAAAGCAGGTTATTCTGTTGAACTTAAAGAGCGTACTACTGGGAATGGTGGAGGCGGTAAATGGGATGTAGTTTTAGCATCGACAGTTTCACCAAATACTTTTAACATTGTGCAATGTACAGGTGTACCTTCTTTAGCACTTGTCCTTCGTGTTGAAGGTGATATTGACATAAAACAATTCGGTGCAGTTGGTGACGGTGTAACTGATGATAATGCTGCAATCAATGCTGCACACGAGTTTGCAAGAGACTTGGTAGGTTATAACACTGTTATTGTGCCACCGTCAGAATCTGGTTCTGAATACATTTTTACACAAATCAAGGTGTATTCAAAAACCACATTCAAAGGTGAAGGTGGCGTGTTGAAGTTGAAAGACAACACTGTGACCGATGTCGGCTTGTCGTATTACCCTATCAATAACCTCGGTGAAGACCGTGTGATCTATGACGGCTTGATTGTAGAAGGTAACTCTGCGAACAACCCTGCACCAGTGGTGTGTGACACCATTACATGCACTGGTTTCAGAAGTAAAGTAATCAACTGTGTTCTATTTAATGCTGTTGACAGTGGGGTCATGTTCTCTGGTGCGATTCGGGCATACTGTAAAAACAACTATGTGGAAAATGCACGAGATCTGTGCATCTACGTGAACGCATCGGTAGATGGTGATCTTGATGAATCCATTGTCTCTAACAACATTTGTAAAGGTGCACCGTTTGGTGGTATCGGGATCAAACGTTTCGCAGCAAACTGTATCGTTGAAGGTAACACCATCGATGATTGTGGTAATGGGATCACAGTAGAAGATTTCGGTGGAGGCAGTAACCCTACTAACCTTCAGATTCTGAACAATTCAATGCGTCGAATTGGCTACACTCAACGTGGTGCTTCTGTCGCTGAGCGTGGTATTAGCATTTCAAGAGCTGAGAATTTAATTGTTTCCGGTAACAGAGTTCGTGATTGTTCCGGTAATTGCATTCTAGCGTCAAATCTTTCTGATTCCATAATCTCTAACAATCATCTGGTAGGTTATACGACTGACCCTGCTGCTTCTGGTAATAACGGTATTATCGCTTCAATAACACCTGTGAGTAATGTTGTAGTTGAAGGTAATGTGATTAAAGGTGTTGCAACTAGAGGGATCTATTTCGGTGACCCTACAGAGTGTCAGATTGTAAATAATCAGGTTGAATCTGTTAGTTCTGCACTTCGGATAAACGCATCAGGTTCAGAAAACATCGTAACAGGTAACGTGTTGTATGGCACTGGCGGTCTTGATGTTGAATTGTTTGCAGGTGCTGTCACAGTTTATAAAGACAACATACTGAAAAATGGATCAACTGAACTCGCTAAATATGGAGTCAGAACTATTTCAGCAGGTCAACCATTCCCTGATGTATCTGGTTTTGTCGCATTGTCCCCAGGAGAAGAGGTGCTTCATCTTGCTGATACAAGCTGGTGGAAATCATACGGAACTGGTGCCGGTGAATGGAAACGAATGACAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dea77541f59abb9b72eed44ca570f36bb2b2c0e0d279cc5b98e7934ebcfa8027
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8511
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank