Protein

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Genbank accession
YP_009799945.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 0,69
Protein sequence
MAMQMQSSLGSNLKKTDSDDFKINTLTYGTITKVNYQYSTVEVRTNRTYAGRVNGTDGQYSIPFPRGFTGRTPEGRPFGSTPLIIPGMLVLLGFIEGESGNPIVLSIYSNPEDSKMLTPNPLESGDIRNDDIYTYGSMMFSIFPSLNYSFQNGNGTIVRSLNGNSFLSITSEDDEKPMATDFGIGTEYEDLMSSKYGNGEIIESRNQRAPDMLFKHQGDLNTNNHITMLQLTEQGTLRFSVLNTETNSRTSWEIDDQGNQRTLSQKDDLILDNGQDYVEYGIDKEHNDFYIKNGNHDLRFTDQGLLLDGKPMIDDIGNQIDEQLSKLKEIQEALKDVNDLLEGAGKQNLLEVIDASERSEQRSKSALEQVTGLNTQVQQVSSRVEGNITNLNNFMSNINEYVQTNDEIIQELLTFKDDLNVDSIPEIKQTEEKYRHTTFRDIKIHADLPFKFNGYDNLTLTNNVSYYYPQGLAVDDDYYYFIHDTPELVNRLLVVYDKKFNFVAKYYIGFHGGENIHVEKEGDKRYLYAKTVVGKIGKFDISDIRYTEETKELLPEEEYNVILYTNFFRTKEGWGFEGNNNSKGGYLQRDTVVFYNHDFSRITGSLWISPSNSTLWSNDLLGSITNYSAKKQGMALVNNTIVQTLGGNYMLSRDKEIHNYHLQGVQEISPSGDIMNDYTYNPEELIDYLRSLGKNPSVIEHESAFTYNNRLFSIIVYVKASSSEAKNKGILVVEYKPKEKDYTFNKKGIPFTAPTAKYNPYKPNINGNIYNEYTGEKLDSIKKVIKYLKETYQDKVIVYTSEIEMKDYNENKYGSGLKITIENLNNYTFFINIKDNVSNYNENYVVTYSGSGEYSLTNTQVDKRFTGLDLLNVENSLEGYSISTKGIPSGISTSGWVKVRVNYTVRRVEYKPYNESNIYVNTAYNDVWNGWEKISSNIEEQIKNLNNTGIVVSKEEPQEAMIWFEVTD
Physico‐chemical
properties
protein length:968 AA
molecular weight: 110536,54750 Da
isoelectric point:4,90187
aromaticity:0,11157
hydropathy:-0,63399

Domains

Domains [InterPro]
DC_0539
STR
277–962
DC_0539
Coil
Unmapped
313–347
Coil cd19958
YP_009799945.1
1 968
Architecture
STR
STR 277-962 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799945.1
1 968
Domain Start End Length (AA) Confidence
N-terminal 1 164 164 0,8044
Central domain 165 626 463 0,4040
C-terminal 627 968 341 0,0633
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-164
Central
165-626
C-terminal
627-968

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiSA_BS2
[NCBI] 		2126724 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799945.1 [NCBI]
Genbank nucleotide accession
NC_047948 [NCBI]
CDS location
range 66371 -> 69277
strand +
CDS
ATGGCTATGCAAATGCAATCTTCTTTAGGTAGTAACCTAAAGAAAACAGATTCAGATGATTTTAAGATTAATACTTTAACTTATGGAACAATAACGAAAGTTAATTATCAATACAGTACAGTAGAAGTAAGAACGAATAGAACATATGCAGGAAGAGTAAATGGTACAGACGGACAATATTCTATACCATTTCCAAGAGGATTTACAGGTAGAACACCAGAAGGAAGACCTTTTGGTTCTACCCCATTAATTATTCCAGGTATGTTAGTTTTACTAGGGTTTATAGAAGGTGAAAGTGGAAACCCTATTGTCTTATCTATTTATTCTAATCCTGAGGATAGTAAGATGCTGACACCTAACCCATTAGAGAGTGGGGATATTAGAAATGATGATATTTATACTTATGGTAGTATGATGTTTTCTATATTCCCTTCTTTAAATTACTCATTCCAAAATGGTAATGGTACAATTGTTAGAAGCTTAAATGGTAACTCATTCTTATCAATAACATCTGAAGATGATGAAAAACCAATGGCAACTGATTTTGGTATAGGTACAGAATATGAAGATTTGATGTCTTCTAAATATGGTAATGGTGAAATCATTGAGTCTAGAAACCAAAGAGCACCTGATATGTTATTTAAACATCAAGGAGATTTAAATACAAATAACCATATTACAATGCTACAGCTAACAGAACAAGGTACGCTTAGGTTCTCTGTACTTAATACTGAAACGAATAGTAGAACTTCTTGGGAGATTGATGACCAAGGAAACCAACGTACCTTATCCCAGAAAGACGACTTAATACTCGATAATGGACAAGATTATGTAGAATATGGTATAGATAAAGAACATAATGACTTCTATATTAAAAATGGTAATCATGATTTAAGATTTACTGATCAAGGTTTACTTCTAGATGGTAAACCTATGATAGATGACATAGGTAATCAAATAGATGAACAATTATCTAAATTAAAAGAAATACAAGAAGCTTTAAAAGATGTGAATGATCTTTTAGAAGGTGCAGGTAAACAAAATCTACTAGAAGTTATAGATGCTTCTGAAAGGTCTGAACAACGTTCTAAAAGTGCTTTGGAACAAGTTACAGGGCTTAATACCCAAGTCCAACAAGTATCTTCAAGAGTAGAGGGTAATATTACTAACTTAAATAATTTTATGAGTAATATTAATGAGTATGTACAAACAAATGATGAGATTATTCAAGAGTTATTAACATTTAAAGATGATTTGAATGTAGATAGTATTCCAGAAATTAAACAAACAGAAGAGAAATATAGACATACAACATTTAGAGATATTAAGATACATGCAGATTTACCTTTTAAATTTAATGGGTACGACAACTTAACTTTAACTAACAACGTTTCTTATTATTACCCTCAAGGTTTAGCTGTTGATGATGATTATTATTATTTTATACATGATACACCAGAATTAGTGAATAGATTATTAGTCGTATATGACAAAAAATTTAACTTTGTAGCTAAATACTATATAGGGTTTCATGGAGGAGAAAATATTCATGTAGAAAAAGAAGGAGACAAAAGATACCTCTATGCTAAGACGGTTGTAGGTAAAATAGGAAAATTTGATATAAGTGATATTAGATACACAGAAGAGACAAAAGAACTTTTGCCTGAAGAAGAATATAATGTCATTTTATACACTAACTTTTTTAGAACTAAAGAAGGTTGGGGGTTTGAAGGAAATAATAATTCTAAAGGCGGTTATTTACAAAGAGATACTGTTGTATTTTATAATCACGATTTCAGTAGGATAACAGGTTCTTTATGGATAAGCCCTAGTAACTCAACATTATGGTCTAACGACCTTTTAGGTAGTATTACTAATTATAGTGCTAAAAAACAAGGTATGGCTTTGGTTAATAACACTATAGTACAAACTTTAGGTGGTAATTACATGCTTTCTAGAGATAAGGAGATTCATAACTATCATTTACAAGGAGTACAGGAAATAAGTCCTAGTGGAGATATTATGAACGACTATACTTATAACCCTGAAGAGTTGATAGACTACTTGAGAAGTTTAGGTAAAAACCCTTCTGTCATAGAGCATGAAAGTGCATTTACTTATAATAACAGATTATTTTCTATAATCGTTTATGTTAAAGCAAGTTCTTCAGAAGCAAAAAATAAAGGAATACTTGTAGTAGAGTATAAACCAAAAGAGAAAGATTATACTTTCAATAAAAAAGGAATACCTTTTACAGCACCTACAGCAAAGTATAACCCTTACAAACCAAATATTAATGGGAATATATATAACGAGTATACAGGTGAGAAACTGGATAGTATTAAAAAGGTTATTAAGTATCTAAAAGAAACCTACCAAGACAAAGTTATAGTTTACACATCAGAAATAGAAATGAAAGATTATAATGAAAATAAATACGGTTCAGGACTAAAAATAACTATTGAAAATTTAAATAACTATACTTTCTTTATAAACATAAAGGACAATGTGTCTAATTATAATGAGAACTATGTGGTAACTTATAGCGGTTCAGGAGAATACAGTTTAACTAATACCCAAGTAGATAAAAGATTTACTGGATTAGATTTATTAAATGTCGAAAATAGTTTAGAGGGGTACTCTATAAGTACTAAAGGAATACCTTCAGGAATATCGACATCAGGATGGGTTAAAGTAAGAGTTAATTATACGGTAAGAAGGGTAGAATATAAACCCTATAATGAATCTAACATATATGTGAATACAGCATATAATGATGTTTGGAATGGTTGGGAAAAAATAAGTTCTAATATAGAAGAACAAATTAAAAACTTGAATAATACAGGAATAGTAGTATCTAAAGAAGAACCACAAGAAGCAATGATTTGGTTTGAGGTGACTGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b23cd14bcb6ce10fe260874fd88fc4f6b279c53aceca586668f786a4beb80ac2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5768
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation,the biological characteristics and genomics of two new strains of lysate Staphylococcus aureus phage Jin,X., Zhang,C., Wang,X. and Zhong,J. 2021-10 — GenBank