Protein

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Genbank accession
QDH50482.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,73
Protein sequence
MAAPKVKFKRSSVAGKIPALSNLETGELALNTYDGKLFLKVDTGGIGIGTTVSVVNPWVENYGATGISYDGRINISGITTFNNNVNFNGNITSNVTIVSTDTGSSAAPEFKLYRNSASPDDGDYLGQIKFAGESDTGVERNYAKITGKILDASNGTEDGIIEFAHIKGGSQNISARFRSDSLQLLNGTSLTVNGSSTFTGNILANSDSTVDIGTNSTRFANVYADTYYGDGSNLTGISAGAGGTENVSSNTTVSGIITASSQFYPPTLTTSERDALTVTQGALIFNTTENKVQMYLGSEWKSLAFELNTYTSIGI
Physico‐chemical
properties
protein length:315 AA
molecular weight: 33094,00280 Da
isoelectric point:4,74994
aromaticity:0,08571
hydropathy:-0,19778

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50482.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,5238
Central domain 58 256 200 0,1086
C-terminal 257 315 58 0,9827
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-256
C-terminal
257-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50482.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 15899 -> 16846
strand -
CDS
ATGGCGGCTCCAAAGGTAAAGTTTAAGCGCTCATCTGTAGCGGGAAAGATTCCTGCACTCTCGAATCTGGAGACGGGTGAATTAGCACTTAATACTTATGATGGTAAATTATTTTTAAAAGTCGATACTGGTGGTATTGGTATTGGAACCACAGTATCTGTCGTCAACCCATGGGTTGAAAATTATGGTGCAACTGGTATCAGTTATGATGGAAGAATAAACATATCTGGCATCACAACGTTTAATAACAACGTAAATTTTAATGGTAACATAACATCCAACGTTACTATTGTCTCTACAGACACAGGAAGCTCCGCTGCACCAGAATTCAAACTTTATAGGAATAGTGCTTCCCCAGATGATGGAGATTATCTGGGACAGATTAAGTTTGCTGGTGAAAGTGATACTGGTGTAGAAAGAAATTACGCTAAGATTACTGGTAAGATCTTAGATGCCAGTAATGGAACCGAAGATGGTATCATTGAATTTGCTCACATTAAAGGTGGGTCACAAAATATTTCTGCAAGATTCAGAAGTGATAGTCTTCAACTCTTAAATGGTACAAGTCTTACAGTAAATGGAAGCTCAACATTTACTGGAAATATCTTAGCAAATTCTGATAGTACTGTAGATATAGGAACAAATAGTACTAGGTTTGCAAATGTATATGCAGACACATATTATGGTGATGGTTCTAATTTAACTGGTATTTCTGCTGGTGCAGGTGGTACTGAAAATGTGTCATCAAACACCACTGTCTCAGGAATCATTACTGCATCTTCACAGTTCTATCCACCAACACTAACAACGTCCGAGAGAGATGCATTAACTGTAACTCAAGGTGCATTGATTTTTAATACGACCGAGAACAAAGTACAGATGTATCTTGGTTCTGAATGGAAATCATTAGCATTCGAACTGAATACCTATACATCAATCGGTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7cc4b9d0a3d82dae1c2550008ac32956de988c2853bbbcc2a1a71f796c544253
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7827
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank