Protein

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Genbank accession
ATB52655.1 [GenBank]
Protein name
putative partical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGGLSGLVADIAPDQLQPDGASYSENVKAVTDGWAKSDGYTSTSLTPGNEMTHLFFYSPTDGDDRWFVAGDTTIKYYRGALLTDATRDADPYNKAGSWRWSFTDFNGVLVANNSVDEPQSFNITTNKFQDITELDSKVRFRTLVKFKSYLFGLGVDSGQGYNDSEVYWSHPADPGFLPANWDFADPASDSGKNTLPSSGYLLDALELGNSLIIYKSDSTWICRFAGGQFVFSFEPKWDSQGLLARGCVTQFEGKHFVVTQTDIMVHNGVSSKSVADRRVKKFFFDNLSRENFQRTFVVKRPDTNEIYIFYPSRDSAEGYLDSALIYHWVNDNWEFRKLPELTSAAFGTAIPEGVKDWDSQTGPWEQEGTWQLGEDGRIFAPTLYMAMKDKNEIQVPSYSGLDNDQPIQGIWERRDIVLGPVSRDGVVGQNYENYKTISALTFDVTTTEPFRVWLGFRDRLTESIIWEDFGDFDPTLGRTLDLIETTAFLSIRLVTNASGFILRNLHIEFEIGGEVS
Physico‐chemical
properties
protein length:516 AA
molecular weight: 58058,66380 Da
isoelectric point:4,60421
aromaticity:0,13566
hydropathy:-0,39283

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATB52655.1
1 516
Domain Start End Length (AA) Confidence
N-terminal 1 399 399 0,9242
Central domain 400 505 107 0,0426
C-terminal 506 516 10 0,5853
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-399
Central
400-505
C-terminal
506-516

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VspS_VS-ABTNL-3
[NCBI] 		2026084 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATB52655.1 [NCBI]
Genbank nucleotide accession
MF497422 [NCBI]
CDS location
range 13480 -> 15030
strand +
CDS
ATGGGAGGTCTTAGCGGACTCGTAGCTGACATTGCGCCTGACCAGTTACAGCCTGATGGAGCTTCGTATTCGGAGAACGTCAAGGCTGTCACTGATGGTTGGGCTAAAAGTGATGGTTACACTTCCACCAGTTTAACCCCAGGGAATGAGATGACTCATCTCTTCTTCTACTCCCCGACGGATGGGGATGATCGCTGGTTTGTAGCAGGTGATACTACGATTAAGTATTATCGAGGCGCACTCCTAACCGACGCTACTCGTGATGCAGATCCTTACAATAAAGCAGGTTCGTGGCGCTGGTCGTTTACAGACTTTAATGGAGTTCTGGTTGCTAACAACAGTGTCGATGAGCCACAGTCTTTTAACATCACTACTAATAAGTTCCAAGACATTACAGAGCTTGACAGTAAGGTTCGTTTTAGAACTCTTGTTAAGTTCAAGTCTTACTTATTTGGGCTTGGTGTGGATAGTGGTCAGGGTTATAACGATAGTGAAGTTTACTGGTCGCATCCTGCTGACCCAGGTTTCTTACCTGCTAACTGGGATTTTGCTGACCCTGCCTCGGATTCTGGTAAGAACACGTTGCCAAGCTCAGGGTACTTATTAGACGCCCTAGAGTTAGGTAACTCACTTATCATCTATAAGTCAGACTCTACTTGGATTTGTCGTTTTGCCGGCGGTCAGTTTGTTTTCTCATTTGAACCTAAGTGGGATAGCCAAGGACTTCTAGCTCGTGGTTGTGTAACGCAGTTCGAGGGCAAACACTTCGTAGTTACGCAAACCGATATCATGGTACACAATGGGGTATCCTCTAAGAGTGTTGCGGATAGACGAGTTAAGAAGTTCTTCTTTGATAATTTGTCTCGTGAAAACTTCCAGAGAACTTTCGTTGTTAAACGTCCCGACACTAACGAGATTTATATCTTCTACCCAAGTCGTGATTCTGCGGAAGGTTATCTTGATTCAGCTCTTATTTACCATTGGGTAAATGATAACTGGGAGTTCCGTAAACTTCCTGAGTTGACTAGTGCGGCATTTGGTACTGCAATACCCGAAGGCGTTAAAGACTGGGATAGTCAAACAGGTCCTTGGGAGCAGGAAGGTACTTGGCAGCTTGGGGAAGATGGTCGTATATTCGCACCAACTCTTTACATGGCTATGAAAGATAAGAATGAAATTCAAGTTCCATCTTATTCTGGCTTGGATAATGACCAACCTATTCAGGGTATATGGGAACGTCGTGATATAGTTCTCGGTCCTGTGTCTAGGGATGGTGTAGTAGGTCAAAACTATGAGAACTATAAAACGATTAGTGCCCTCACATTTGATGTCACTACTACGGAACCTTTTCGTGTGTGGCTTGGTTTCAGAGATCGTTTAACTGAATCTATTATCTGGGAAGACTTTGGCGACTTTGACCCAACGCTGGGACGTACCTTAGACTTGATAGAGACTACTGCGTTTCTGTCTATTCGACTGGTAACTAATGCGTCAGGTTTTATTCTGCGTAATTTGCATATAGAGTTCGAGATTGGTGGGGAGGTATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e18549627cb2f98e3145c26f0b352d7cb2bfbd800634cbb685212dc2c508e8e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8918
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome squencing of lytic phage specific to Vibrio splendidus responsible for the infection in the juvenile sea cucumber, Apostichopus japonicus Li,Z., Zhang,J., Ren,H. and Xu,Y. 2023-12 — GenBank