Protein

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Genbank accession
AZU97853.1 [GenBank]
Protein name
coil containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MACNDFPTVDDMKQLKLDSQDENTFMTSTDLTFTTSTGRTILTLTGLLASGQYLPPVPYAAGISFTEADYTKTIERNGIVYAPLPSQIPFTTSGTWTGDDENKFFVVQGVTVDSLPTYTDLVFDSVADMLNGNPQRLPLNAVATVRGTEFKRISGDGTDLSHYESLTDLYLGAFGASDDADYSAEIQQAIDTGYPINLDKNYTFTNLSIPSSAKIKGLGSLVGFNSNGAKPTRAAMESAVDQAARLTLLQAYNQNTVTFTGGGDFTGRVSIENALISGSAFTCRGEMFLVNSSSTTSITANGEGTVYADGIIISDVVDDAIFCQRGGTWHAEGAIVVATGKRGLHAQMGKIYANDASVDQATGEGAFATIGGRIFAKRLRLTNGSTIGILNLYGASSEIDQCFIDGNSGAACVSESNSAIYAENGTFTNCSKGLSTSYNGFIQARGGTITGNAGLAVDLLTGGYVNVQDAIIDTTNNGGGTQIRAKTLGFVIAEEPGTPGSGKDTLTASMYIPEYNVISNGLSLITDAEDDFTEYPANETGVSFAREIIMRRTTLTISSGEVTPETAWTLLNPESGTADNLDNIARSTSRRVDKISLQLNNSGDTITIRHNQGNIRTRDGANIVLNATAQVVDFVWNDKVSVWSQVQ
Physico‐chemical
properties
protein length:647 AA
molecular weight: 68652,22720 Da
isoelectric point:4,47223
aromaticity:0,07883
hydropathy:-0,15209

Domains

Domains [InterPro]
IPR011050
STR
174–457
IPR011050
DC_0504
STR
276–523
DC_0504
AZU97853.1
1 647
Architecture
STR
STR 174-523 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZU97853.1
1 647
Domain Start End Length (AA) Confidence
N-terminal 1 183 183 0,9955
Central domain 184 541 359 0,9630
C-terminal 542 647 105 0,9766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-183
Central
184-541
C-terminal
542-647

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage LP.2
[NCBI] 		2500151 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio maritimus
[NCBI] 		990268 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZU97853.1 [NCBI]
Genbank nucleotide accession
MK249871 [NCBI]
CDS location
range 18320 -> 20263
strand -
CDS
ATGGCTTGCAATGACTTCCCAACCGTCGATGACATGAAGCAACTAAAGCTAGATAGTCAAGACGAAAATACATTTATGACTTCGACGGATTTGACATTCACTACGTCAACAGGTCGAACAATCCTAACTCTAACCGGCCTTCTTGCTTCTGGTCAATATTTGCCGCCAGTACCTTACGCTGCTGGCATTTCATTCACAGAAGCAGACTATACAAAAACCATTGAGCGCAACGGCATTGTATATGCTCCACTACCATCTCAAATCCCATTCACCACTTCAGGGACTTGGACTGGAGATGATGAGAATAAGTTTTTCGTTGTTCAGGGCGTTACTGTTGACTCGCTGCCAACCTACACAGACCTAGTTTTTGATAGTGTTGCTGATATGCTTAACGGCAATCCTCAAAGGCTTCCATTAAATGCCGTTGCTACCGTAAGGGGTACGGAGTTCAAAAGAATTAGCGGTGACGGCACAGATCTATCTCATTACGAATCGCTAACTGACTTGTATCTGGGGGCATTCGGTGCTTCTGATGACGCCGATTATTCAGCAGAAATTCAACAAGCAATTGATACTGGCTACCCGATAAATCTGGATAAAAACTACACGTTTACAAACCTGTCAATTCCAAGTTCAGCGAAAATAAAAGGACTTGGATCACTAGTTGGATTTAACTCCAATGGCGCAAAGCCTACTAGGGCGGCAATGGAGTCGGCAGTAGATCAAGCTGCAAGACTTACTTTGTTACAGGCATATAATCAGAACACCGTAACATTCACAGGTGGCGGGGATTTTACTGGACGGGTATCTATAGAAAACGCTTTAATATCAGGAAGTGCGTTCACTTGTCGTGGCGAGATGTTTTTAGTAAATAGTTCGTCTACTACATCTATAACAGCCAATGGAGAGGGTACGGTTTATGCCGATGGAATTATTATCTCAGACGTTGTCGACGATGCTATATTTTGCCAGCGCGGGGGCACATGGCACGCTGAGGGTGCAATAGTTGTCGCTACAGGAAAGCGAGGTCTACATGCTCAAATGGGGAAGATATATGCCAATGATGCAAGTGTAGACCAAGCAACTGGAGAAGGTGCATTTGCTACGATTGGGGGTAGGATTTTCGCCAAAAGACTAAGGCTAACAAATGGTTCGACAATTGGTATTCTTAATTTGTACGGCGCATCATCAGAAATAGACCAGTGCTTTATTGATGGTAACTCTGGGGCCGCTTGCGTATCGGAATCAAACTCTGCAATATATGCAGAAAACGGAACCTTCACTAATTGCTCAAAAGGTCTTTCTACGTCTTACAATGGATTCATACAGGCCAGGGGTGGGACGATAACCGGAAATGCTGGACTGGCTGTTGATTTGTTGACTGGTGGCTACGTAAACGTTCAGGATGCCATCATAGATACAACAAATAATGGTGGTGGAACACAAATCAGAGCTAAAACTTTAGGGTTTGTTATAGCAGAGGAGCCAGGAACACCAGGAAGTGGCAAGGACACTCTGACGGCTTCAATGTACATTCCAGAATATAACGTGATATCCAACGGTCTAAGCTTGATCACAGATGCTGAGGATGACTTTACAGAATATCCAGCTAATGAGACTGGAGTGTCGTTTGCTCGTGAGATAATCATGCGCAGAACTACGCTGACCATATCTTCTGGGGAAGTTACACCAGAAACAGCGTGGACCCTACTTAACCCAGAATCGGGGACTGCGGATAACCTAGATAACATTGCAAGGTCAACATCAAGACGAGTTGACAAGATAAGCCTTCAACTAAACAACTCTGGCGATACGATCACCATTAGACACAACCAAGGCAACATTAGGACTAGGGACGGAGCAAATATAGTTCTAAATGCCACAGCTCAAGTGGTGGACTTTGTGTGGAATGACAAGGTCAGTGTTTGGTCGCAAGTTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d9f8f287f0b484bbb7a68b0d287d202283d54ab6b3a7825becc83eeba8fc1885
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7647
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Vibrio Phage LP.2 from the the coastal water of Qingdao, China Han,Y. 2019-07-13 — GenBank