Protein

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Genbank accession
CAB52533.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
Protein sequence
MGVICILLLGMKQLVELITQSFPMLPILQKNNHSQTEEPFDGKATVQYLANGTINLFSTPYKGHTPVNSIRNGKYLKFVAKTDKQTLNNDIWYKTDTGGWVEASLITFDKSGNYVVNKITAQGTLEVGDDIQGIIVKNDGVGTVSYAGPGKVPLYTSPFGGHKSGQYLSNGQSYKIYWKAKDIDGTVWYNLGNRDTQWISSKYFVLSKTGDYATQKAYGRLSINGNVTVMSGPGGTGNVISWNNKGQYPIYDISTDYEGTKWYHIGQQNGHQLWVKSGDNVSFKEPGTVEYKEDDAAKANIKQTAQVPVYSDPSGISPTGKYYSLGSLLRITAQSTSQGKTFYEVGTNQWINSDFFSFAHATDVAPGEDDSNAKPEVSEQTLELDETVLVSEYARITNAPLRVQAVDLSSYGIGNDKNKLLAVAKAYMQEYRIGYPNISLTVSYDQMQGEYQKLTQVDLYDYVSVLFDEVGIFEKAQCTSITWDPVREIATSITIGQLPISYDHALNNFVTNMVKKNTTTATKRATHLFGELKQVMEEKDQDQKAGLLKLTRQLSIDDQAWRDSYDRLQSMITSINTTVQDVHNWIAGGGGGEITAYPNWQKPTELRALSNGGGYLRFNAEGLEYVGRDGVARSAIDSQGRLIAERITGGTITGVKLEGITVDGDSYIRSIGGDGKVAVMSGDHGFSCTAPGKEKVALDWDQNWGVLRIGNQYLYASDIAWIRQQRGGRIH
Physico‐chemical
properties
protein length:731 AA
molecular weight: 80707,32930 Da
isoelectric point:5,86581
aromaticity:0,10123
hydropathy:-0,43434

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAB52533.1
1 731
Domain Start End Length (AA) Confidence
N-terminal 1 37 37 0,9902
Central domain 38 709 673 0,2391
C-terminal 710 731 21 0,8019
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-37
Central
38-709
C-terminal
710-731

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage phiadh
[NCBI] 		12417 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus gasseri
[NCBI] 		1596 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAB52533.1 [NCBI]
Genbank nucleotide accession
AJ131519 [NCBI]
CDS location
range 35121 -> 37316
strand +
CDS
ATGGGCGTAATATGCATTCTCTTACTAGGGATGAAACAACTAGTGGAACTTATAACGCAATCATTCCCTATGTTACCTATTCTCCAGAAGAACAACCACAGCCAGACGGAGGAACCATTTGATGGAAAAGCCACAGTTCAATATTTGGCTAACGGTACAATTAACCTTTTTAGTACCCCATATAAAGGCCACACCCCTGTAAACAGTATCAGGAATGGCAAATACTTAAAGTTTGTTGCGAAAACTGATAAGCAAACGCTCAATAATGATATCTGGTATAAGACTGATACAGGTGGTTGGGTTGAAGCCAGTTTGATTACATTTGACAAGTCAGGTAACTATGTAGTTAATAAGATCACTGCTCAGGGAACTCTTGAAGTGGGTGATGATATTCAAGGCATAATTGTTAAGAATGACGGTGTTGGTACGGTTTCATACGCAGGTCCTGGTAAAGTGCCACTTTATACTTCACCTTTTGGAGGTCATAAGAGCGGACAATACCTATCTAATGGTCAAAGCTATAAGATTTATTGGAAGGCAAAAGATATCGATGGAACTGTTTGGTACAATTTAGGCAATCGAGATACGCAATGGATTTCATCTAAATATTTTGTCTTATCAAAGACTGGGGACTATGCAACTCAAAAAGCCTATGGCCGTTTAAGCATTAACGGTAATGTAACAGTGATGTCAGGTCCTGGTGGGACAGGAAACGTAATTAGCTGGAATAATAAAGGTCAATATCCGATTTATGATATTTCAACTGACTATGAAGGCACTAAGTGGTATCACATTGGTCAGCAGAATGGCCATCAGCTTTGGGTTAAATCTGGCGATAATGTTAGCTTTAAAGAACCTGGAACAGTTGAATATAAAGAAGATGATGCAGCAAAAGCTAATATTAAGCAAACTGCACAAGTTCCTGTATATAGTGATCCAAGTGGTATAAGTCCAACCGGCAAATACTATAGCTTAGGTAGTTTACTAAGAATTACAGCGCAGTCAACTAGTCAAGGTAAAACCTTTTATGAAGTTGGAACTAATCAATGGATTAATTCAGATTTCTTCAGTTTCGCTCATGCCACAGATGTAGCACCAGGTGAAGATGATTCGAATGCTAAGCCTGAGGTATCAGAACAAACTTTAGAATTAGACGAAACAGTGCTAGTTTCTGAATATGCACGGATTACTAACGCACCTTTGAGAGTGCAAGCAGTAGATTTATCTTCTTATGGAATTGGTAATGATAAGAACAAGTTGCTAGCAGTTGCTAAAGCTTATATGCAAGAATACAGGATCGGTTACCCAAATATTTCGCTTACTGTTTCATATGATCAAATGCAAGGCGAGTATCAAAAATTAACTCAAGTTGACTTATATGATTATGTGAGTGTGTTATTCGATGAAGTAGGAATTTTTGAAAAAGCTCAATGCACTTCCATAACTTGGGATCCTGTTAGAGAGATTGCTACCAGTATTACAATAGGCCAGTTGCCTATTAGTTATGACCATGCTTTAAACAATTTTGTCACTAATATGGTTAAAAAAAATACAACGACGGCTACTAAAAGAGCGACTCACTTGTTTGGCGAATTAAAGCAAGTAATGGAAGAAAAGGACCAAGATCAAAAGGCTGGGCTACTTAAATTAACTAGGCAACTTAGTATTGACGATCAAGCTTGGAGAGATAGCTATGATCGATTGCAAAGCATGATTACTTCCATAAACACGACGGTTCAAGACGTCCACAACTGGATTGCCGGTGGTGGCGGTGGTGAAATCACTGCGTATCCTAATTGGCAGAAACCAACTGAACTAAGGGCCTTGAGTAATGGAGGGGGTTATCTCCGATTTAATGCTGAAGGCTTGGAATACGTTGGACGCGATGGAGTTGCTAGAAGTGCTATAGACAGTCAAGGTCGGCTAATTGCTGAAAGAATTACTGGTGGTACGATCACAGGTGTTAAGCTTGAAGGTATCACAGTAGATGGGGATTCTTACATTCGTTCAATTGGTGGCGATGGAAAAGTTGCAGTTATGTCGGGCGACCATGGCTTTTCTTGCACAGCACCTGGCAAAGAAAAAGTTGCTCTTGATTGGGATCAAAATTGGGGAGTATTGAGAATTGGAAATCAATATTTATATGCTTCCGACATTGCTTGGATTCGTCAACAACGAGGTGGCAGAATTCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c2e642a999f76eb6c43dc45cb8f481aec0211ce9ef4a19116562634ccfbe6b4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6527
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic organization and sequence of the region encoding integrative functions from Lactobacillus gasseri temperate bacteriophage phi adh Fremaux,C., De Antoni,G.L., Raya,R.R. and Klaenhammer,T.R. 1993 8472961 GenBank
Primary structure and functional analysis of the lysis genes of Lactobacillus gasseri bacteriophage phi adh Henrich,B., Binishofer,B. and Blasi,U. 1995 7836307 GenBank
Structure of a genome region of the Lactobacillus gasseri temperate phage phi adh covering a repressor gene and cognate promoters Engel,G., Altermann,E., Klein,J. and Henrich,B. 1998 — GenBank
Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage (phi)adh Altermann,E., Klein,J.R. and Henrich,B. 1999 10452953 GenBank