Protein

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Genbank accession
UYD72135.1 [GenBank]
Protein name
intramolecular chaperone auto-processing domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAKGYSFDALAAFMENLDAVKANKTINLTAGDGLSGGGTLSANRTFSVNSTVVRTSGNQTIGGTKTFSSTIVGSINGNAATATNATTAANCSRTITTGDGLTGGGTLTANRTFAVDSTVVRTSGNQTISGTKTFSSTISGSITGNAGSATKWQTARTLSLSGDASGSVSMNGTANVTLSVTVANDSHTHDGRYFTESESNSRFAYKAGSGGQDFYTRRLLATGTGNDYNNGALELKGNGTTNTVFPTIGFHQPNKYAGSLQMRAGGDFRFYTQGGSSYGVVRAATFYGALSGNASTATWADTVDVGSGNTASTWYDVVWHSGDSVYSSPGVEIQGSTNSIKSNRHYFAGTTYYLREATGAYGTVATYGRKGGWGGYSIEGRVNFMHNGATTTGIFNDVGKEWLFKAEHNGSAEMFYDGASKIATSSTGATVTGTLVATGNVNDSSGRVYSPGNKPSKSDVGLSNVANYGVTSSVSSTSTSHYATAKAVKTAYDRASSALSAPNKVYTGTDTGEAVYPIGHLLVAYVGNGSINREHKNSHQTLYNLASSSDRALWGSSLYNSHQGSAVVGTWAYRGMVGIVANVWTALFERVL
Physico‐chemical
properties
protein length:592 AA
molecular weight: 61385,22440 Da
isoelectric point:9,18508
aromaticity:0,09628
hydropathy:-0,29544

Domains

Domains [InterPro]
DC_1451
STR
5–305
DC_1451 IPR005068
G3DSA:6.10.140.2190
STR
38–74
G3DSA:6.10.140.2190 G3DSA:6.10.140.2190 DC_0955
IPR040956
Unmapped
49–68
IPR040956 IPR040956
UYD72135.1
1 592
Architecture
STR
STR 5-590 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD72135.1
1 592
Domain Start End Length (AA) Confidence
N-terminal 1 68 68 0,5619
Central domain 69 267 200 0,3245
C-terminal 268 592 324 0,8874
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-68
Central
69-267
C-terminal
268-592

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_VPs20
[NCBI] 		2978980 Uroviricota > Caudoviricetes > Chaseviridae > Liaoningvirus > Liaoningvirus VPs20
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD72135.1 [NCBI]
Genbank nucleotide accession
OP056089 [NCBI]
CDS location
range 47195 -> 48973
strand +
CDS
ATGGCTAAAGGCTATTCCTTTGACGCACTAGCAGCCTTTATGGAAAACCTAGATGCAGTCAAAGCAAACAAGACAATAAACTTAACCGCAGGAGACGGCCTATCTGGTGGTGGTACTCTATCAGCGAACCGTACATTCTCTGTTAATAGTACTGTCGTCCGAACATCAGGCAACCAGACGATTGGTGGTACTAAGACCTTTAGCTCTACCATTGTCGGCAGCATCAATGGTAACGCGGCAACTGCTACTAACGCAACAACTGCGGCAAATTGTAGTAGAACAATTACTACAGGTGATGGTCTTACGGGCGGTGGTACACTAACTGCTAACCGAACATTCGCAGTAGATAGCACAGTCGTGCGTACATCAGGCAACCAAACTATTTCAGGCACAAAGACGTTTAGTTCGACCATCTCTGGTAGTATTACCGGCAACGCTGGCTCTGCAACTAAATGGCAAACAGCGAGAACATTAAGCCTGTCTGGAGACGCATCAGGCTCAGTATCAATGAATGGCACAGCAAACGTCACGCTGTCAGTTACTGTAGCAAATGACTCCCACACGCACGATGGTCGCTACTTCACCGAGTCAGAGTCTAACTCGCGATTTGCTTATAAGGCCGGCAGCGGCGGTCAAGACTTTTACACAAGACGACTTTTAGCTACTGGTACAGGCAACGACTACAACAACGGTGCTCTTGAACTCAAAGGTAATGGCACAACCAACACTGTCTTTCCGACTATTGGATTTCACCAGCCAAATAAGTATGCAGGAAGTCTGCAAATGCGTGCGGGTGGTGATTTCAGATTCTACACTCAGGGCGGTAGCTCATATGGTGTAGTTCGAGCAGCTACTTTCTACGGCGCATTGAGCGGCAACGCTTCAACTGCGACGTGGGCTGATACTGTAGATGTTGGCTCAGGAAACACTGCATCGACTTGGTATGACGTTGTTTGGCACTCTGGTGATTCGGTTTATTCAAGTCCAGGCGTTGAGATTCAGGGTAGCACAAACTCTATTAAATCTAACCGTCACTACTTCGCAGGAACAACGTATTACCTACGAGAGGCAACCGGTGCTTATGGCACAGTTGCGACCTATGGCCGTAAAGGTGGATGGGGTGGCTACTCGATTGAGGGTCGCGTTAACTTCATGCACAACGGCGCTACCACTACAGGTATTTTCAACGATGTAGGTAAGGAATGGCTATTTAAGGCGGAGCATAACGGCAGTGCGGAAATGTTCTACGATGGAGCCTCCAAGATTGCTACATCAAGCACTGGTGCGACGGTTACTGGTACTCTTGTGGCAACGGGCAACGTGAACGATTCTTCTGGTCGCGTTTACAGTCCGGGCAATAAGCCAAGTAAGTCTGACGTTGGTTTAAGTAACGTCGCCAACTACGGCGTAACCTCTTCTGTAAGCAGTACGTCAACTTCTCATTACGCAACGGCGAAAGCCGTTAAAACGGCGTATGACAGAGCAAGCTCTGCGCTTTCAGCACCAAATAAAGTTTACACAGGAACGGATACAGGAGAAGCCGTGTATCCTATCGGACACCTTCTAGTGGCATATGTGGGAAATGGGAGTATTAATCGCGAACACAAAAATAGTCACCAAACACTATATAACCTCGCAAGTTCCTCTGATCGTGCACTTTGGGGAAGTAGCCTATATAACTCACACCAAGGATCGGCAGTGGTAGGTACATGGGCTTATCGAGGAATGGTAGGCATAGTGGCAAATGTTTGGACTGCACTATTCGAGAGGGTCTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f67c228b0bef25507a924c8a87876fd402c7447f71eb83eb3c6c898272d5130
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6109
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50