Protein

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Genbank accession
AFB15313.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MARQGLLAQSKPLAATDTLLYSAPVDTSASAVLKIANDGTGSAYSVALRDYDQDLVLDSSSYLLHKGDIVTSYRVSIDTAVSVGSFTPGAQFVSSSGESTMKFESFYVPPLTTIYVKTTSIRVISLELIDTATGEFNVGDTVSKGVAPDNTDAVIYDVNGDFITIGPSTINGLGTEFVDGDAITSSSTASGTIAAGGISATENKFIFSETTVGGTYSRTVSDLFSDRVYRFDVSDTSMTGLLFALSETENGEWGPDGLAPTDPNDALDGGIEYTIGKTTNGTAGSGGAYVQYDMAANTSLPTSLFWYETDLTTAANASYGGGQDSFSTSSEVTYTEFYAYDLDGTWTNNVDSFEDNFITYTVEGQTSGPYGVVSDYTGTSLKIILGVGSAEFAGSNTFFDVPKSNTADRNTVTVSSVTTAKSTIAADSYLVDGNTNSANNTDTVTSLVVGPGQRVHVNSVTANNVFSLIGFEDGSSEYTTRVYGQT
Physico‐chemical
properties
protein length:486 AA
molecular weight: 50961,76480 Da
isoelectric point:4,05003
aromaticity:0,10082
hydropathy:-0,10741

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM8 A.HR5
[NCBI] 		869726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFB15313.1 [NCBI]
Genbank nucleotide accession
HQ317385.1 [NCBI]
CDS location
range 21446 -> 22906
strand +
CDS
ATGGCTAGACAAGGACTTCTCGCACAATCTAAACCACTAGCAGCAACAGATACTTTACTGTATTCTGCTCCTGTAGATACTTCGGCGTCGGCAGTTTTGAAGATTGCCAATGACGGTACTGGTTCTGCATATAGTGTTGCTCTCAGAGATTATGACCAAGACTTAGTTTTAGACTCTTCGAGTTATCTTTTGCATAAAGGTGACATCGTTACTTCGTATCGAGTCTCTATTGATACTGCTGTTAGCGTTGGTTCTTTTACACCAGGAGCTCAGTTTGTTAGTAGTAGCGGTGAATCTACTATGAAATTTGAGTCTTTCTATGTTCCACCTCTGACGACAATTTATGTAAAGACCACAAGTATTAGAGTTATTTCTCTAGAACTTATTGATACTGCAACTGGAGAATTCAACGTAGGAGACACGGTTAGTAAAGGAGTAGCACCAGATAATACTGATGCCGTTATTTACGATGTTAACGGTGACTTTATTACCATTGGACCATCTACTATTAATGGTCTTGGTACAGAATTTGTTGATGGTGATGCCATTACAAGTTCTTCTACTGCGAGTGGCACAATTGCTGCTGGTGGTATTTCTGCTACAGAAAATAAGTTTATCTTCTCCGAAACTACTGTTGGTGGTACATATAGTAGAACAGTCAGTGACTTGTTCAGTGATAGGGTATATCGTTTTGATGTTTCTGATACTTCCATGACAGGTTTACTCTTTGCATTATCAGAGACTGAAAATGGTGAGTGGGGTCCTGATGGTTTAGCACCTACTGACCCTAATGATGCTCTTGATGGTGGTATAGAATATACTATTGGAAAAACAACTAATGGAACTGCTGGTAGTGGCGGTGCATACGTTCAGTATGACATGGCAGCAAATACTTCTCTTCCCACTTCATTGTTCTGGTATGAAACTGATTTAACTACTGCTGCTAATGCTAGTTACGGTGGTGGTCAGGATTCATTTAGTACTTCTTCTGAAGTTACATACACCGAGTTTTATGCTTATGATTTAGATGGAACTTGGACTAACAACGTAGATAGTTTTGAAGATAACTTCATTACCTATACTGTTGAGGGGCAAACTTCTGGACCTTATGGTGTAGTCTCTGATTATACGGGAACATCATTGAAGATTATTCTTGGAGTTGGTTCTGCTGAGTTTGCTGGATCAAATACATTCTTTGACGTTCCTAAGAGTAACACTGCCGATAGAAACACTGTAACAGTATCTTCTGTAACTACTGCCAAGTCTACTATTGCCGCTGATAGTTATCTGGTTGATGGTAATACTAATTCTGCAAATAATACTGATACGGTTACTTCTTTAGTTGTTGGTCCTGGTCAAAGAGTTCATGTTAATAGCGTAACTGCAAACAATGTTTTCAGTTTGATTGGTTTTGAGGATGGCAGTTCCGAATACACAACTAGGGTGTACGGTCAGACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c039d99ea0209a6431f95068787c9a3a4847417321a4e5efc3b36bf1d8327c01
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3761
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Rapid diversification of coevolving marine Synechococcus and a virus Marston,M.F., Pierciey,F.J. Jr., Shepard,A., Gearin,G., Qi,J., Yandava,C., Schuster,S.C., Henn,M.R. and Martiny,J.B. 2012 22388749 GenBank
The Genome Sequence of Synechococcus phage S-RIM8 isolate A.HR5 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank