Protein

View in Explore

Genbank accession

YP_007673142.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,89

TSP

Evidence RBPdetect2

Probability 0,87

Protein sequence

MADFRLGRLKFNWRGDWTVATAYVIDDIVKFGANTFVCISNHTSASNEAQWYGSDGARWQLHTEGIYHRGEWADATFYRTNDIVKYGNDQYRVVNPHTSSGSFAAANFVSYINGLKFEDTWDTNTEYQPGDIVTFGGYSYVAQTISTGSQPNSTIGSDWEILTTGFKVVGTWSNSTEYKPGDVVLLGGNSYVAKTTNTNSTPGSNPSDWDFVVGGFTWRGTWDTSTTYQPGDAVTRASNSYICVAETTGNEPELDVNGDYWNSLTQGAQSNVLTDAGDVLYISGSGAARLPIGTTGQVLSVDSNGFPAWENNNVTDPVYYVTTNGNDLNDGSNISKAFASLSHAVSLVTGPATIYVKAGIYNETLPIIVPENVSIIGDNMRTSTVKPNVGQPSNIQRLTLATIPLAAERVIGETCTNGAGDKTAQIMDVRDGGASIDVMPLTGGVWTTSDTFDNGGANIALNTVNTLNNENATLFYLSNRSMLKDLVMDGMAGFVPSVSDPKDMNTSTPDGVFVRLNPNSPISKSPYVSQCSAFSQTGIGAIVDGGVHDKYDGTGTPSNKSIVFDSWTNIHESGGVGFWITNNGAAEIVSCFTYYCHISYTSTRGGRIRSLAGNSSWGTYAIVSSGFNENESTLDGFIDGIELNYDPLTLSTGATFESAENVTGGTSGAVGEITSFQPSADKILIRPLKGNFAQNEVVTGSNSTATATLVNNSDAQKGMSGFTFVLGGLTAAPDPGGSIEYITGPGGLGSDLFTYVVANSSYAGPTGRGELTVTRGLLGSAATTHDGLSTVARYQTGTATSLSAPVSDAVGTVIQVASITGINTGGYVIIEDEMMEVVSFPTATSVEVIRGVEGTTGAAHNSGVTVRALQIKVPTETTTARDLTASDTVILVETSTGTLSSDYIKIDSEFMQVSQSATITTGTVLVVLAEEKPSATYDRQATRIRYLYSQVRLTGHDFLDIGTGNKTQTNWPGQPLSAPAPGNEVTENFPGRVFFVSTDQDGNFTVGRYFKVNQATGSTTLNASSFDLSGLSSLRLGSIGAQIGESINEFSADVTMSANSNAKVPTQKAVKTYVDTKTKTKGFTFWAGAM

Physico‐chemical properties

protein length:	1090 AA
molecular weight:	115381,76650 Da
isoelectric point:	4,60989
aromaticity:	0,09174
hydropathy:	-0,18954

Domains

Domains [InterPro]

DC_0393
STR
1–165

DC_0393 IPR036573 DC_1819 DC_0763

G3DSA:2.10.10.20
ATT
16–62

G3DSA:2.10.10.20 G3DSA:2.10.10.20 IPR036573 IPR003610 IPR003610 IPR012334

IPR003610
CBM
118–162

IPR003610 G3DSA:2.10.10.20 G3DSA:2.10.10.20 IPR011050

G3DSA:2.10.10.20
ATT
119–166

G3DSA:2.10.10.20

DC_1011
STR
160–217

DC_1011

YP_007673142.1

1 1090

Architecture

STR

ATT

STR

ATT

STR

STR 1-15 | ATT 16-108 | STR 109-118 | ATT 119-265 | STR 266-1088 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0393	STR	DC_0393	1	165	Novel HMM	DC_0393	Central	Low	Positional only	25 proteins / 25 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	16	62	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	70	108	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
IPR036573	STR	IPR036573	117	161	Merged direct domain	Carbohydrate-binding module superfamily 5/12	Central	Low	Positional only	2 proteins / 2 hits
IPR003610	CBM	DC_0028	118	162	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	119	166	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
DC_1011	STR	DC_1011	160	217	Novel HMM	DC_1011	Central	Low	Positional only	27 proteins / 27 hits
IPR036573	STR	IPR036573	166	210	Merged direct domain	Carbohydrate-binding module superfamily 5/12	Central	Low	Positional only	2 proteins / 2 hits
IPR003610	CBM	DC_0028	169	212	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	170	211	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
DC_1819	STR	DC_1819	210	335	Novel HMM	DC_1819	Central	Low	Positional only	62 proteins / 62 hits
IPR003610	CBM	DC_0028	219	264	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	220	265	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
IPR012334	STR	IPR012334	312	493	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	315	647	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
DC_0763	STR	DC_0763	437	1088	Novel HMM	DC_0763	Central	Low	Positional only	71 proteins / 71 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_007673142.1

1 1090

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	369	369	0,9864
Central domain	370	697	329	0,8763
C-terminal	698	1090	392	0,2600

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-369

Central
370-697

C-terminal
698-1090

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage S-CAM1 [NCBI]	754037	Uroviricota > Caudoviricetes > Pantevenvirales > Anaposvirus > Anaposvirus socalone
Host	Synechococcus sp. [NCBI]	1131	cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host	Synechococcus sp. WH 7803 [NCBI]	32051	Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Genbank protein accession

YP_007673142.1 [NCBI]

Genbank nucleotide accession

NC_020837.1 [NCBI]

CDS location

range 185835 -> 189107
strand -

CDS

ATGGCAGATTTCAGATTAGGCAGACTTAAGTTTAATTGGAGGGGCGACTGGACAGTTGCCACTGCATACGTCATCGATGACATCGTTAAGTTTGGTGCAAACACTTTTGTTTGTATTTCAAACCACACGTCAGCATCGAATGAGGCGCAATGGTATGGATCGGATGGTGCCAGATGGCAACTCCATACCGAAGGCATTTACCACAGAGGTGAATGGGCAGATGCAACCTTCTATAGAACTAATGATATTGTCAAGTATGGCAATGATCAGTATAGGGTTGTCAACCCCCACACTTCCAGCGGATCTTTCGCTGCTGCAAACTTCGTCTCGTATATTAACGGACTGAAGTTTGAAGATACGTGGGACACCAATACTGAATACCAACCAGGTGACATTGTAACTTTCGGTGGTTACTCTTATGTTGCTCAAACAATCTCTACTGGTTCACAACCCAATAGCACTATTGGTAGTGACTGGGAGATCCTAACTACTGGTTTCAAGGTAGTTGGTACATGGAGCAACAGCACCGAATACAAGCCTGGTGACGTTGTACTCCTTGGTGGTAACTCCTACGTTGCTAAAACAACCAACACAAACTCCACACCTGGATCTAATCCTTCTGATTGGGACTTCGTTGTTGGTGGTTTCACCTGGAGAGGCACTTGGGATACAAGCACAACTTACCAACCTGGTGATGCTGTCACCAGAGCAAGTAACTCCTACATCTGTGTTGCCGAAACAACTGGCAACGAACCTGAACTAGATGTTAACGGAGACTACTGGAACTCCCTGACCCAAGGCGCACAGTCTAACGTACTAACCGATGCTGGTGATGTTCTTTACATCTCTGGTTCAGGTGCTGCAAGACTACCTATTGGAACAACTGGTCAAGTTCTATCCGTTGATTCTAACGGATTCCCCGCATGGGAAAACAACAATGTTACCGACCCTGTTTACTATGTTACCACAAATGGTAACGACCTAAACGACGGTTCTAACATCAGCAAAGCATTTGCTTCACTCTCTCATGCAGTAAGTCTTGTTACTGGTCCTGCTACCATTTATGTTAAGGCAGGTATCTATAACGAAACTCTACCAATCATCGTTCCCGAGAACGTTTCGATCATTGGTGACAACATGAGAACGTCCACCGTTAAACCAAACGTTGGACAACCTTCTAACATCCAAAGACTAACACTTGCAACGATTCCTCTTGCTGCAGAGAGAGTCATTGGCGAGACATGCACAAATGGTGCTGGCGATAAGACCGCACAGATCATGGATGTCAGAGACGGTGGTGCTAGCATCGACGTTATGCCTCTTACTGGCGGCGTCTGGACTACCTCCGATACTTTCGACAATGGTGGTGCTAATATCGCACTTAACACCGTGAACACTCTCAATAACGAGAACGCAACTCTCTTCTATCTGTCTAACAGATCGATGCTGAAGGATCTCGTTATGGACGGTATGGCAGGATTCGTTCCTTCTGTATCCGATCCAAAGGATATGAACACCTCTACTCCAGATGGTGTATTCGTTAGACTGAACCCCAACTCCCCAATCTCCAAGTCTCCTTACGTTTCGCAGTGTTCTGCATTCTCCCAGACTGGTATTGGTGCAATTGTTGACGGTGGTGTTCACGATAAGTATGACGGAACTGGAACTCCTTCTAACAAGTCTATCGTTTTTGACTCCTGGACTAACATCCACGAAAGCGGTGGTGTAGGTTTCTGGATTACGAACAACGGCGCTGCTGAAATCGTATCCTGCTTCACCTACTATTGCCACATCTCTTACACCTCTACTAGAGGCGGTAGAATCAGATCCTTGGCAGGTAACTCCTCCTGGGGTACTTACGCTATTGTTTCCTCTGGTTTCAACGAAAATGAGTCTACTCTCGATGGATTCATCGACGGTATCGAACTCAACTACGATCCCCTTACCCTATCTACAGGCGCAACTTTTGAAAGTGCCGAGAATGTTACGGGTGGTACTTCTGGTGCAGTTGGCGAAATTACTAGTTTCCAACCTTCGGCAGACAAGATTCTTATCCGTCCTCTCAAAGGTAACTTTGCACAGAACGAAGTTGTCACTGGTAGCAATTCTACAGCAACTGCAACTCTGGTCAACAACTCTGACGCTCAAAAGGGTATGTCAGGTTTCACCTTTGTTCTCGGTGGTCTAACCGCTGCTCCTGACCCAGGTGGTTCTATTGAATACATCACTGGTCCTGGTGGACTCGGTTCTGATCTATTCACTTATGTTGTTGCTAACTCTTCTTACGCTGGTCCTACTGGACGTGGAGAACTGACTGTAACCAGAGGACTTCTTGGTTCTGCTGCTACAACTCATGATGGTTTGAGCACTGTTGCTAGATACCAAACTGGTACTGCAACATCTCTATCTGCTCCTGTTAGTGACGCGGTTGGCACTGTCATCCAAGTTGCTTCAATTACTGGCATTAACACTGGTGGTTATGTCATCATCGAAGACGAGATGATGGAAGTCGTTTCGTTCCCAACTGCAACTTCTGTTGAAGTTATCAGAGGAGTAGAAGGCACCACTGGTGCTGCACATAACTCTGGCGTTACAGTCAGAGCACTTCAGATCAAGGTTCCTACCGAGACAACTACCGCTAGAGACCTAACAGCATCTGACACAGTTATTCTTGTTGAAACGTCTACGGGTACTCTATCCTCTGACTACATCAAGATTGACAGTGAGTTCATGCAGGTTTCCCAATCCGCAACAATTACAACTGGTACTGTACTGGTTGTTCTTGCAGAAGAGAAGCCTAGTGCAACTTACGATCGTCAAGCTACAAGAATCAGATACCTGTATTCACAAGTCAGACTAACTGGTCATGACTTCCTGGATATCGGTACTGGTAACAAGACCCAGACTAACTGGCCAGGTCAGCCTCTATCGGCACCTGCACCAGGTAATGAGGTTACTGAAAACTTCCCTGGTCGTGTGTTCTTCGTATCCACGGACCAAGATGGTAACTTCACCGTTGGTCGTTACTTCAAAGTTAACCAGGCAACTGGTAGCACAACCTTGAACGCATCTTCCTTCGACTTGTCTGGTCTATCATCCTTGAGACTTGGTTCCATCGGTGCTCAAATCGGTGAATCTATTAACGAGTTCTCGGCGGATGTAACCATGTCTGCAAATAGCAACGCTAAAGTTCCTACGCAGAAGGCAGTCAAGACTTACGTTGACACAAAGACGAAGACGAAAGGCTTCACTTTCTGGGCGGGAGCAATGTGA

Genome Context

Tertiary structure

PDB ID

65f5a9c149c695d04ef7af0bcfd58707e73259af3320c46d83fb96d17fb214cb

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6618

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
The Genome Sequence of Synechococcus phage S-CAM1 0208SB26	Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B.	2011-09-23	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature