Protein

View in Explore
Genbank accession
YP_011897732.1 [GenBank]
Protein name
long tail fiber
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,57
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAITKIILQQMVTMDQNSITASKYPKYTVVLSNSISSITAGELTTAIESSKASAAAAKQSEINAKQSELNAKDSENEAEISAASSQQSATQSASSATASANSAKAAKTSETNAKASETAAKTSETNAKASETAAKTSETNANSSKTAAAASASAAKTSETNAAASASAAKTSETNANSSKTAAANSANAAKVSETNAKTSETNAAASATKAENVASGMRDSIGLGNSARDCPDISGNPSAYIGFMRIREGVPGWPSIANGEAYLTGVISVNDGSPSYTGIFQGWGSRSLYTYRWASNLGPQWTRHARKDEVNRLVQIANDQTRLYAGNGTTYMEVGNNRAWGVYDSVLNKWQPLAIAQGGTGGITDIEARTNLRLGVNDSPQFANLNLVRSSDVATTAGGILQSILSDTTGVQRTRCRFYSELRGDDKAWGTIHLQKGDKNQYAGLNEDGDFSLNSGDFIGRRVKLSANFSYPVEITSAHPTIRFNETDRPANTPYYSFVFDGGNWRIQKDGYDGTKSSSAISYNYARDEIEIPNLKVNAIATPINLTQTKTNLQIPFTGLARWTDYNAPAGAEAKKYYPVIISHPLYYNGDFLVEVAMRTKSITRNEEPNCNAIHLWIRDAGWSDMGAAVFGHYFCYAKNENAILCVRGTDKGQYPHNAIYVRGDAFPIRLATTVGCIVTIPTSDWKPSTAAGSPTYKWGISNSGEGIDIDTYGISNNLLDFTASATGFYCTDTYRNKYGDSYQVISANGTIQPANGVATYLNQDWNTQHTDGVNKFKPIAGQVNSPENGIVYAGFHTSFSESYATQFAGRNSRFWVRSIEAGESKEWLKLITATLAPKIPTDARDGFISDNAGDTSWAPSNGGGFQSSYAENRIMQSWIDSAGRLYSRFLTTNQPTTSKTDVPWKSAAMLELDNRFTGSNTFLGDILCSAANPLTLKSANPTLSFVESDVDNSTYMFVADGGGFRLNRDNTAGAEIFNYSRSQNNLKLGVSSYFTLNTRFDQGWTSRGSVDVTTTGYSGIAFITTGSTDSVGARNQFEVSPDNSFYLARRNRSNQTGQWIIHFPTAGGTLALSGTSDINYKTNIEEYDGIHSIENIKAMDLVTFVFKDDEKKRTRRGVIAQQIEQIDPTYVKHTYEPCGEPIVDDDGVVQGYTDTKERVVLDNNVLLLDALCAIKVLAQRDEEKTERINKLEKDVEDLKTVVEHLLTTMKNS
Physico‐chemical
properties
protein length:1214 AA
molecular weight: 131448,49600 Da
isoelectric point:5,76492
aromaticity:0,08896
hydropathy:-0,46639

Domains

Domains [InterPro]
DC_0608
ATT
2–177
DC_0608 DC_0195
Coil
Unmapped
57–77
Coil DC_0840 IPR030392 Coil
IPR030392
CHP
1078–1190
IPR030392
YP_011897732.1
1 1214
Architecture
ATT
STR
STR
ATT 2-177 | STR 178-606 | STR 643-1214
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011897732.1
1 1214
Domain Start End Length (AA) Confidence
N-terminal 1 523 523 0,4604
Central domain 524 734 212 0,7143
C-terminal 735 1214 479 0,9320
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-523
Central
524-734
C-terminal
735-1214

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_StyS-LmqsSP1
[NCBI] 		2749424 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus LmqsSP1
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011897732.1 [NCBI]
Genbank nucleotide accession
NC_104259.1 [NCBI]
CDS location
range 20491 -> 24135
strand +
CDS
ATGGCTATAACTAAAATAATCTTACAACAAATGGTCACCATGGACCAAAATAGTATAACTGCAAGTAAATATCCTAAGTATACAGTTGTACTTTCTAATTCTATTAGCTCTATCACTGCTGGTGAGCTAACTACTGCAATAGAATCCTCTAAAGCATCAGCTGCAGCAGCTAAACAATCAGAAATCAATGCAAAGCAATCAGAACTAAATGCTAAAGATTCTGAGAATGAGGCAGAAATTTCTGCAGCATCTTCCCAGCAATCTGCAACTCAGTCTGCTTCTTCTGCTACTGCTTCTGCTAATAGCGCTAAAGCTGCTAAGACTTCTGAGACTAACGCAAAAGCTAGTGAGACGGCTGCAAAAACTTCAGAAACCAATGCAAAAGCTAGTGAAACAGCGGCTAAAACTTCTGAGACCAATGCTAATAGTAGCAAAACTGCTGCTGCTGCATCTGCTTCCGCAGCAAAAACCTCAGAAACTAATGCTGCTGCATCTGCTTCTGCCGCTAAAACTTCTGAAACTAACGCTAATAGTAGTAAAACTGCTGCTGCTAACAGTGCTAATGCTGCTAAAGTATCAGAAACTAATGCTAAAACTTCGGAAACTAATGCGGCTGCTTCAGCTACTAAAGCTGAAAATGTAGCTTCCGGCATGAGAGATTCTATAGGCCTAGGTAATTCAGCTCGTGATTGCCCAGATATTTCTGGTAATCCTTCTGCATACATTGGTTTTATGCGTATTCGTGAAGGTGTGCCTGGATGGCCTTCTATTGCTAATGGGGAGGCGTATTTAACTGGTGTTATTTCTGTTAATGACGGTTCTCCTTCCTACACTGGTATTTTTCAGGGATGGGGTAGTCGCTCATTATACACGTATCGTTGGGCAAGCAATCTAGGCCCTCAATGGACACGTCACGCTCGTAAAGACGAGGTAAATAGACTTGTACAGATAGCGAATGACCAAACTAGATTATATGCTGGCAATGGTACTACATACATGGAAGTAGGCAATAATAGAGCTTGGGGGGTATATGACTCTGTACTCAATAAGTGGCAACCGCTGGCTATAGCTCAGGGCGGTACAGGTGGAATTACAGATATAGAGGCACGTACCAACCTGAGACTGGGGGTAAACGATAGCCCACAATTTGCAAACCTTAACCTTGTAAGGTCTTCAGATGTAGCAACTACGGCAGGAGGTATTCTACAAAGCATCCTCAGTGATACAACAGGGGTGCAGAGGACACGCTGCCGCTTTTACTCAGAATTACGTGGTGATGATAAAGCATGGGGAACGATTCATCTTCAAAAAGGTGACAAAAATCAATATGCTGGATTAAACGAGGATGGAGATTTCTCTCTAAATAGTGGTGATTTTATTGGTAGAAGAGTAAAATTAAGTGCCAATTTTAGTTATCCAGTAGAGATAACAAGTGCTCATCCTACTATCAGATTCAATGAAACTGATCGTCCAGCAAACACACCTTATTACAGTTTTGTTTTTGACGGAGGTAATTGGCGTATTCAGAAAGATGGCTATGATGGTACAAAAAGTAGTAGTGCTATTAGCTATAACTATGCAAGAGATGAAATAGAAATTCCAAATCTCAAGGTTAATGCTATTGCCACTCCCATAAATCTTACACAGACAAAAACAAATCTGCAAATACCATTTACTGGTTTAGCTCGTTGGACTGATTATAATGCTCCTGCAGGAGCTGAAGCTAAAAAATATTATCCTGTAATTATAAGCCATCCATTATACTACAATGGTGATTTCCTTGTTGAAGTTGCTATGAGAACTAAATCTATAACTAGAAATGAGGAACCTAACTGTAATGCTATTCATTTATGGATTAGAGATGCTGGATGGTCTGACATGGGTGCAGCAGTATTTGGTCACTATTTCTGCTATGCTAAAAACGAAAATGCTATCCTATGTGTTAGAGGTACTGATAAGGGTCAGTATCCTCATAATGCAATTTATGTTCGGGGAGACGCTTTTCCTATTAGGCTTGCTACAACTGTTGGTTGCATTGTAACCATACCTACATCTGACTGGAAGCCTTCAACTGCAGCAGGTAGTCCTACGTACAAATGGGGTATCTCAAACTCAGGAGAGGGTATTGATATTGATACCTACGGCATCAGTAATAATTTGCTTGATTTTACAGCAAGTGCGACTGGATTTTATTGTACTGATACATACCGCAATAAATATGGTGATTCTTATCAAGTAATATCAGCGAATGGCACCATACAGCCAGCTAATGGCGTTGCAACATACTTAAACCAAGATTGGAATACTCAACATACAGATGGAGTAAATAAGTTTAAACCTATTGCTGGACAAGTAAACTCACCGGAAAATGGAATTGTTTATGCCGGTTTTCACACCAGTTTTAGTGAAAGTTATGCTACTCAGTTTGCAGGACGTAATTCCAGATTCTGGGTAAGAAGTATTGAAGCTGGGGAAAGTAAAGAATGGTTAAAACTTATTACTGCTACATTAGCCCCTAAAATTCCTACAGATGCACGAGATGGTTTCATCAGTGATAACGCAGGAGATACCTCTTGGGCTCCTAGCAATGGTGGGGGTTTTCAGTCTAGTTATGCCGAAAACCGCATTATGCAGAGCTGGATTGATAGTGCGGGAAGATTATATAGCAGATTTCTAACAACTAATCAGCCTACAACCTCAAAAACGGATGTTCCCTGGAAAAGTGCTGCGATGCTAGAGCTGGATAATAGGTTCACGGGAAGTAATACTTTTCTTGGAGATATTCTATGTAGCGCTGCCAATCCGCTTACTCTTAAGTCTGCAAACCCTACCTTATCTTTTGTAGAGTCTGACGTAGATAACTCTACATACATGTTTGTAGCAGATGGAGGTGGTTTTAGGCTTAACAGGGATAATACTGCAGGTGCGGAGATATTTAACTACAGCCGATCCCAAAACAATCTTAAACTTGGTGTAAGTTCTTATTTTACTCTAAATACTAGATTTGATCAGGGATGGACATCTAGAGGTTCTGTAGATGTAACTACTACGGGGTACAGTGGCATTGCTTTTATTACAACAGGCTCAACTGATAGTGTTGGCGCACGTAACCAATTTGAGGTTTCACCAGACAATAGTTTTTACTTAGCTCGACGTAATAGAAGTAACCAAACTGGACAATGGATTATACACTTTCCTACTGCTGGAGGTACTCTAGCACTTAGTGGTACATCAGATATTAACTACAAGACTAATATAGAAGAATATGACGGTATTCATTCCATAGAAAATATTAAGGCTATGGATCTTGTTACTTTTGTATTTAAGGATGATGAGAAAAAACGTACTCGCAGAGGGGTTATTGCTCAGCAGATTGAGCAGATAGATCCTACCTACGTTAAACATACGTATGAACCATGTGGGGAACCCATTGTTGATGATGATGGGGTTGTTCAAGGGTATACTGATACGAAGGAAAGGGTTGTTCTAGATAATAATGTTCTTTTATTAGATGCGCTATGTGCTATAAAAGTATTAGCACAACGGGATGAGGAGAAAACCGAACGTATTAATAAACTTGAGAAAGATGTGGAAGACTTGAAAACTGTAGTAGAGCATTTGTTGACTACTATGAAAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c541c86f933038a66d62e98be5277345e499771b4524f1c9e9599d62ee879e60
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5738
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Salmonella phage vB_StyS-LmqsSP1 Hammerl,J.A. and Kittler,S. 2003-08 — GenBank