Protein

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Genbank accession
WVO01534.1 [GenBank]
Protein name
regulator of chromosome condensation
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIPFTRILEYGNKVAAPAKVIDFFLDSDNTAATMWMHLNNGELWGTCDKNYGYVLGFPVGVNYYGEMHLVKRDVKTAWGSTYGTFVLSNDDKLFYTGRQTIYDGTSNTATWVDKTSFYSTYFDILKIKKITMNYNTVYILLNDGSLYAHGKNDYGYFGSANKTPSFTPVLLKSSVQDCWITNINGVYQDLDGTFWGTGDNTYQQMQTTSQSTVYTTWTQLFSEATSEVDYEYNAFRISQTHFMLFRTDGKYYCSGRNYAGAWGIGNISVDANVRLYTAQLAFKPGNLLSLFGTSIQTYWTNILSDTNGVLYFAGYMDGGGGDRLLTFTPRYTVQGNGNTYRAYTNTRMFALCALNMSPLLYAKGSGLTTSAGVGFTPLSTPLSENFTLITDFNLREDNI
Physico‐chemical
properties
protein length:399 AA
molecular weight: 44777,61040 Da
isoelectric point:5,59503
aromaticity:0,15789
hydropathy:-0,23985

Domains

Domains [InterPro]
IPR009091
STR
12–174
IPR009091 IPR009091 DC_1965
IPR009091
STR
60–273
IPR009091
DC_0918
STR
71–205
DC_0918
WVO01534.1
1 399
Architecture
STR
RBD
STR 12-322 | RBD 323-399
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WVO01534.1
1 399
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,1392
Central domain 58 388 332 0,7050
C-terminal 389 399 10 0,6194
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-388
C-terminal
389-399

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PHA46
[NCBI] 		3117424 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028
[NCBI] 		1299114 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVO01534.1 [NCBI]
Genbank nucleotide accession
PP191103 [NCBI]
CDS location
range 56175 -> 57374
strand -
CDS
ATGATACCATTTACTAGGATATTAGAGTATGGGAATAAGGTAGCAGCACCCGCAAAAGTGATTGACTTCTTTTTGGATTCGGATAATACCGCAGCGACGATGTGGATGCATTTGAATAATGGAGAGTTATGGGGAACCTGTGATAAGAATTATGGATATGTTTTGGGTTTTCCAGTTGGTGTAAATTACTATGGTGAGATGCATTTAGTTAAGAGGGATGTAAAGACTGCATGGGGTAGTACATATGGAACGTTTGTATTATCGAATGATGATAAATTATTTTATACAGGTCGTCAGACGATATATGATGGTACTAGTAATACAGCCACATGGGTTGATAAGACTTCATTTTATTCTACGTATTTTGATATATTAAAGATTAAGAAAATAACAATGAATTACAACACAGTTTATATTTTGTTGAATGATGGTTCATTATATGCACATGGAAAAAACGATTATGGTTACTTTGGTAGTGCTAATAAAACTCCTAGTTTCACGCCAGTACTATTAAAATCGTCAGTACAGGATTGTTGGATAACGAATATTAATGGAGTATATCAGGATTTGGATGGAACATTTTGGGGTACTGGAGATAACACTTATCAACAGATGCAGACTACATCTCAAAGTACTGTATATACTACATGGACACAATTATTTTCTGAGGCTACATCTGAGGTAGATTATGAATATAATGCATTTCGTATAAGTCAAACACATTTTATGCTTTTTAGGACGGACGGAAAATATTATTGTTCAGGAAGAAATTATGCTGGTGCGTGGGGGATAGGTAATATTAGTGTAGATGCGAATGTTCGGTTATATACTGCACAATTAGCATTTAAGCCGGGTAATTTATTATCACTATTTGGGACATCCATCCAGACGTATTGGACGAATATCCTATCTGATACTAATGGTGTACTATATTTTGCGGGTTATATGGATGGAGGTGGTGGAGATCGTCTTCTCACATTCACGCCAAGATATACAGTACAGGGCAATGGGAACACATATAGGGCTTATACAAATACGAGGATGTTTGCTCTTTGTGCATTGAATATGTCCCCGTTACTATATGCAAAGGGTTCGGGGTTAACAACAAGTGCTGGTGTTGGATTTACGCCATTAAGTACACCATTATCTGAGAATTTTACATTAATAACAGATTTTAATTTAAGAGAGGATAATATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1454c5a41210947c28ac408a1c4876345f1c704b560d0de52bd480cd7daa8dd1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7748
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and efficacy of Salmonella phage PHA46 cocktail in the control of Salmonella Newport and Typhimurium internalized into cherry tomatoes Arista-Regalado,A.D., Viera-Segura,O., Aguilar-Montes de Oca,S., Hernandez,L., Gonzalez-Aguilar,D. and Barba-Leon,J. 2024-07 — GenBank