Protein

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Genbank accession
UCS82778.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALISQSIKNLKGGISQQPDILRYPDQGSMQVNGWSSESEGLQKRPPLVFIKTLANSGGLGQEPYIHLINRDENEQYYAVFTGTGIRVFDLKGNEKQVRAPNGASYITTAHPRNDLRMVTVADYTFIVNRNITVAKNTSSVNLPNFNPNQDALINVRGGQYGRTLQIIINGAARATYQIPDGSQPAHVHNTDAQWLAEELAKQLRQNMAGWTANVGQGFIHIIAPAGQQIDTLTTKDGYADQLINPVTHYVQSFSKLPPNAPNGYMVKIVGDSSKSADQYYVRYDDKRKVWSEVLGWNTEDQVVFNTMPHALVRASDGNFEFKSLEWNPKRCGDIDTNPWPSFVGSTINDVFFFRNRLGFLSGENIILSRTAKYFNFYPASVANLSDDDPIDVAVSTNRIAILKYAVPFSEELLIWSDEAQFVLTAAGTLTARSVELNLTTQFDVQDRARPYGIGRNVYFASPRSSYTSINRYYAVQDVSSVKNSEDITAHVPNYIPNGVFSIAGSGTENFCSVLTSGDPSKIYIYKFLYLNEELRQQSWSHWDFGSNVQILACQSIGSDMYIIMRNQFYTFMARIAFTKNAIDLKGEPYRAFMDFKTAYTIPRGTYNDDTYETVINLNTIYGAKFDKGRVTVLEQDGKIHEFLPPETGWSVNPEIRLTGNLETQLVFIGFNIQFLYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYEDSGSFDIHVENQSSHWQYTMAGGRLGSSALRAGRLNLGTGQYRFPVVGNAKFNTVYISSYETTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 89115,78040 Da
isoelectric point:6,11959
aromaticity:0,11839
hydropathy:-0,35302

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
UCS82778.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UCS82778.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9910
Central domain 143 347 206 0,1734
C-terminal 348 794 446 0,1885
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-347
C-terminal
348-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenP_Rambo
[NCBI] 		2880894 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UCS82778.1 [NCBI]
Genbank nucleotide accession
OK042080 [NCBI]
CDS location
range 23624 -> 26008
strand +
CDS
ATGGCCCTGATAAGTCAGTCCATAAAGAATTTGAAAGGAGGTATCAGCCAGCAACCTGATATTCTCCGTTATCCCGACCAAGGTTCCATGCAGGTCAATGGATGGTCTTCTGAGTCAGAGGGCCTCCAAAAGCGCCCACCTTTGGTCTTCATAAAGACACTCGCTAATAGTGGTGGGTTAGGCCAAGAGCCATACATCCACTTGATTAACCGTGATGAGAACGAACAGTATTACGCTGTGTTCACAGGTACAGGTATCCGAGTGTTCGATTTGAAAGGTAATGAAAAGCAGGTTAGAGCACCTAACGGAGCCTCGTATATCACAACGGCTCACCCTAGGAATGACCTTAGGATGGTGACCGTAGCCGACTACACGTTCATCGTTAACCGAAACATCACAGTCGCTAAGAACACCAGCTCAGTAAACTTGCCAAACTTTAACCCAAACCAAGATGCGTTAATCAACGTTCGTGGTGGTCAATATGGTCGTACCTTGCAGATTATCATCAATGGGGCTGCGAGAGCAACCTACCAGATTCCTGATGGCTCACAACCTGCCCATGTGCATAATACAGATGCTCAGTGGCTAGCTGAGGAGTTGGCTAAACAGTTACGTCAAAACATGGCTGGGTGGACTGCAAACGTAGGCCAAGGGTTCATTCATATCATTGCTCCTGCGGGTCAACAGATTGACACCCTAACGACAAAGGACGGTTATGCAGACCAGTTGATTAACCCTGTGACTCACTACGTACAGTCGTTCTCTAAGTTACCACCAAACGCTCCTAACGGTTACATGGTAAAAATCGTTGGGGATTCCTCTAAGTCTGCCGACCAGTATTACGTTCGGTATGATGATAAGCGGAAAGTTTGGTCTGAGGTTTTAGGCTGGAACACAGAAGACCAAGTGGTGTTCAACACAATGCCTCACGCACTCGTAAGGGCCTCCGATGGTAACTTTGAGTTCAAGAGCCTTGAGTGGAACCCTAAGCGGTGCGGTGACATCGACACTAACCCTTGGCCCTCTTTCGTAGGCTCAACGATTAACGATGTGTTCTTCTTCCGTAACCGTCTAGGTTTCCTTAGTGGGGAGAATATCATCCTGAGTCGTACAGCGAAATACTTTAACTTCTATCCTGCGTCTGTAGCTAACCTTAGCGATGATGACCCTATCGACGTAGCTGTGAGTACGAACCGTATCGCTATCTTGAAGTACGCCGTTCCGTTCTCTGAGGAGCTACTCATTTGGTCTGACGAAGCTCAGTTCGTGTTGACTGCTGCTGGTACACTTACGGCTCGTTCCGTAGAGTTGAACCTTACGACTCAGTTCGACGTGCAAGACCGAGCGAGACCTTACGGTATTGGACGCAACGTGTACTTTGCGAGTCCTCGTTCTAGTTATACATCAATCAACCGCTATTATGCGGTACAAGATGTTAGCTCAGTGAAGAACTCAGAAGATATCACGGCCCATGTACCAAACTATATACCTAACGGTGTATTCAGTATCGCTGGGTCTGGTACTGAGAACTTCTGCTCTGTGTTGACTTCAGGTGACCCTAGTAAGATTTACATCTACAAATTCCTATACCTCAACGAGGAGTTGAGACAGCAATCATGGTCTCATTGGGACTTTGGGTCAAACGTACAGATTCTTGCGTGTCAGTCTATTGGTTCCGATATGTATATCATCATGCGAAACCAGTTCTACACCTTTATGGCTCGTATTGCGTTCACTAAGAATGCGATCGACCTGAAAGGAGAACCGTATCGTGCCTTTATGGACTTCAAGACAGCCTACACGATTCCTAGAGGTACATACAACGACGATACATATGAGACTGTAATCAACCTGAATACAATCTATGGAGCTAAGTTCGACAAGGGACGAGTAACCGTACTGGAGCAGGATGGTAAGATTCATGAGTTCTTGCCTCCAGAAACAGGGTGGAGTGTAAACCCTGAGATTCGACTCACAGGAAACCTTGAGACACAATTGGTGTTCATTGGGTTCAACATCCAGTTCCTTTATGAGTTCTCCAAGTTCCTCATTAAGCAGACAGCCGACGATGGTTCTACCTCTACGGAAGACATTGGGCGTCTACAACTGAGGAGAGCATGGGTGAACTACGAAGATTCTGGTTCGTTCGATATCCATGTTGAGAACCAATCATCTCACTGGCAGTACACAATGGCTGGTGGACGTTTAGGCTCCAGTGCATTACGTGCTGGTCGCTTGAACTTAGGGACTGGTCAGTATCGATTCCCTGTGGTCGGTAACGCCAAGTTCAACACAGTGTACATTTCCTCTTACGAGACTACCCCATTGAATATCATTGGGTGCGGCTGGGAGGGTAATTACCTGCGTAGAAGTTCCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a22dd328b632989706648ecb570650ae3fa804510c9f9ab7736807a66c5f15f7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3181
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Properties of two broad host range phages and the first virulent siphovirus of Yersinia enterocolitica isolated from wild animals Hammerl,J.A. and Hertwig,S. 2021-10-21 — GenBank