Protein

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Genbank accession
YP_010679039.1 [GenBank]
Protein name
putative adhesin
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKLGKFIHNGNLHIKYRPAPLVDVGPVLQYKFLANEPLDEATESMSISSGTVSIQNSSMYTSGSTVNNYFYRKLPSILKNTKFTIELTIRSEGEIPSTSNIIGTWNSSNEFWLLSVINNNLVFQWNNGTATAGTRQVFTFSNVQVPSDQDVHLAVCRDDTMLYGFVNGQLAGSFEVSFAGHTNVVSGSIFSTRSMATTNNYFNGYRKNIRIVNDKALYVAPFTLASVTMADVKPDYYTPEDASLVVGQITCKRNSLFQETMNTPTLLLTGLSNSTTGRFVTTTNNTSGFQFSPVTNWQSGDYTIELYINLSTVGAGGAILIGQWTSSGGTDIGWSISMQQNGSVRHFYSTDGLYDQANGNSGVLQAPNGTLVLNKDTHVCAMRKNGVIGLFVDGVRLAQVNEARPLWNSQIPIRNTWTAPADGYALAERWNIRCISKAMYDIDGFVPPVRLPTFPNLLTNTGSYSRSALSGTTTTADTMGNIIQFNSSGQTSGGGYQKYFIYGSKKVEIIGNTISSDSTQQMRYGLTNTTPTTFAESESDFNSGTFPYAYADRINSVIQIVKQGSVIGSLPHSTANHTFKITYDFENNQFTYEVTSGTAQGQSVTTSLDSTITQNTKFAVCGTKSNIQITSVKIQQ
Physico‐chemical
properties
protein length:636 AA
molecular weight: 69489,78930 Da
isoelectric point:7,07608
aromaticity:0,10377
hydropathy:-0,23318

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
25–217
G3DSA:2.60.120.200 G3DSA:2.60.120.200 DC_0816
IPR013320
STR
62–214
IPR013320 IPR013320
IPR013320
STR
62–225
IPR013320 PF13385
PF13385
LEC
77–214
PF13385
DC_2085
STR
179–428
DC_2085
YP_010679039.1
1 636
Architecture
STR
RBD
STR 25-428 | RBD 429-636
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010679039.1
1 636
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,1848
Central domain 133 331 200 0,2655
C-terminal 332 636 304 0,8636
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-331
C-terminal
332-636

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010679039.1 [NCBI]
Genbank nucleotide accession
NC_071039 [NCBI]
CDS location
range 214275 -> 216185
strand +
CDS
ATGAAATTAGGAAAATTTATTCATAACGGAAATTTACATATAAAATATAGACCGGCGCCGTTAGTCGATGTAGGTCCTGTCCTACAATATAAATTTCTAGCAAATGAACCATTAGACGAAGCAACAGAATCGATGTCAATTTCGTCTGGCACAGTTTCTATACAAAATAGTTCGATGTATACTTCTGGTAGCACAGTAAACAATTATTTCTATAGAAAGTTACCTAGTATACTTAAAAATACCAAATTTACAATAGAACTAACAATAAGGTCAGAAGGCGAAATTCCGTCTACTAGTAATATAATAGGTACATGGAATTCATCTAACGAATTTTGGTTGTTATCTGTAATTAACAACAATTTAGTATTTCAATGGAATAATGGAACTGCCACTGCCGGTACTAGACAAGTATTTACATTTAGTAATGTACAAGTACCTTCAGACCAAGACGTTCATTTAGCTGTATGCAGAGATGACACCATGTTATATGGATTTGTAAATGGACAACTAGCAGGTTCGTTTGAAGTGTCATTTGCAGGACATACTAATGTTGTATCGGGGTCTATATTCTCTACAAGAAGCATGGCCACCACAAATAACTATTTTAATGGATATAGAAAAAATATTAGAATAGTAAATGACAAGGCATTATATGTTGCACCATTCACACTAGCTAGCGTAACTATGGCTGATGTAAAGCCAGACTACTATACCCCGGAAGATGCTAGCTTAGTAGTAGGTCAAATAACATGTAAACGAAATTCATTGTTCCAAGAAACTATGAATACTCCTACTTTACTACTTACAGGTTTATCTAATTCTACAACAGGACGATTTGTAACAACTACTAATAATACTTCTGGCTTCCAATTTTCTCCTGTAACAAATTGGCAATCGGGTGATTACACAATAGAATTATATATAAACTTATCTACAGTAGGCGCCGGCGGCGCCATACTAATAGGTCAATGGACATCTTCGGGTGGCACCGACATCGGATGGTCTATTTCTATGCAACAAAACGGAAGCGTCAGGCATTTCTATTCCACTGACGGATTATACGACCAAGCAAACGGTAACTCTGGAGTATTGCAAGCACCTAATGGTACTTTAGTATTAAACAAAGATACCCATGTATGTGCAATGCGGAAAAATGGGGTAATAGGATTATTTGTAGACGGTGTTAGACTAGCCCAAGTAAACGAGGCAAGGCCATTATGGAATAGTCAAATACCCATTAGAAACACATGGACTGCGCCAGCAGATGGATATGCATTAGCAGAACGCTGGAATATAAGATGTATTTCTAAAGCAATGTATGATATAGACGGTTTCGTTCCGCCGGTTCGTTTACCTACATTTCCTAATTTATTAACAAATACAGGTAGTTATTCGCGCTCTGCATTGTCTGGTACAACTACTACAGCAGATACAATGGGAAATATTATACAATTTAATTCCTCCGGGCAAACATCCGGCGGTGGCTACCAAAAATATTTTATATATGGTTCTAAAAAAGTAGAAATAATAGGAAATACCATATCTTCGGATTCAACACAACAAATGAGATATGGTTTAACAAACACAACTCCTACCACATTTGCAGAGTCAGAATCTGATTTTAATTCCGGTACATTCCCATATGCGTATGCCGATAGAATTAACAGTGTCATTCAAATAGTTAAACAAGGTAGTGTTATAGGTAGTTTGCCTCATTCTACTGCCAACCATACCTTTAAAATAACATATGATTTCGAAAATAATCAGTTTACTTATGAAGTTACTTCTGGCACTGCACAAGGACAATCTGTTACTACAAGTCTAGATTCTACAATAACACAGAATACTAAGTTTGCAGTATGTGGGACCAAATCTAATATACAAATAACTTCTGTAAAAATACAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
302ae90c39b69421af56407de56492466641ba5ebf3ef1a77235b5af1128a6f0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6752
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 — GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank