Protein

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Genbank accession
BAW98243.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MAKEKALPKEVNLTVVLGGKVQELVGKPFDGKKVKDILSTDRLDHISGFVIREELSKCTLYEATAKDENGRELQLIFTNDAHVVKVGELLSMGTPAATLFLVGASKVNVRTINGYMVAWSSEVCCQIVSRATFMESYVDVYNVRHSTFREVTMETGAGGTVISSNLSESEIKIDQQCHMTNSTIHECYLTVDGIARIRNTHMKSVEVEAKGLTVNMSGDVKSFKEFSMRVPGNIEIFHPMCRMSLMGEWYNPFGITLVTGSRDGVVGYWLGKLESFKEAVFLKPEQLNNDTLFTILEELLAEYENQDLDEFTLSVVSHYADAISGRDEIITMARAANRILG
Physico‐chemical
properties
protein length:341 AA
molecular weight: 37931,02870 Da
isoelectric point:5,31492
aromaticity:0,07625
hydropathy:-0,08065

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAW98243.1
1 341
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,0004
Central domain 143 330 189 0,2350
C-terminal 331 341 10 0,9931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-330
C-terminal
331-341

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pTD1
[NCBI] 		1938577 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus pTD1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAW98243.1 [NCBI]
Genbank nucleotide accession
AP017972 [NCBI]
CDS location
range 29613 -> 30638
strand -
CDS
ATGGCTAAAGAAAAAGCACTGCCTAAAGAAGTCAATCTCACTGTTGTTCTAGGAGGTAAAGTACAAGAACTGGTTGGCAAACCATTCGATGGCAAGAAAGTCAAAGACATTTTGTCCACAGACCGATTGGATCATATTTCCGGATTTGTAATTCGTGAAGAACTATCTAAGTGCACTTTGTACGAAGCTACCGCTAAAGATGAAAATGGACGTGAACTTCAACTGATCTTTACCAACGATGCCCATGTCGTGAAAGTGGGTGAGTTGTTGAGTATGGGTACGCCGGCTGCGACTTTGTTTTTAGTTGGGGCGAGTAAGGTGAACGTTCGTACCATAAACGGTTACATGGTCGCATGGTCGTCTGAGGTATGTTGCCAGATCGTTTCTCGAGCTACGTTTATGGAGTCTTACGTAGACGTCTATAACGTAAGACATTCTACTTTCCGAGAAGTGACCATGGAGACTGGTGCTGGCGGTACGGTTATTTCATCTAACCTCTCTGAGTCAGAGATCAAAATTGATCAGCAGTGTCACATGACCAATTCCACCATTCATGAGTGTTACTTGACTGTAGATGGTATTGCGCGTATTCGCAACACTCATATGAAGTCAGTGGAAGTGGAAGCTAAGGGACTGACCGTCAATATGTCCGGTGATGTCAAGAGCTTTAAAGAGTTCTCGATGCGTGTACCGGGGAACATTGAGATCTTCCACCCAATGTGTCGCATGAGCTTGATGGGGGAGTGGTATAACCCATTCGGTATTACGCTCGTAACGGGCTCTAGAGATGGCGTTGTAGGTTATTGGCTAGGTAAGTTAGAGTCATTCAAAGAAGCGGTGTTCCTGAAGCCTGAGCAGCTTAACAACGATACGTTGTTCACCATCCTAGAAGAGTTGTTGGCCGAATACGAAAACCAAGACCTCGATGAGTTTACGTTGTCGGTAGTGAGTCACTACGCTGACGCGATCTCTGGTCGTGATGAAATCATCACTATGGCTCGTGCCGCTAACCGTATCCTTGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9fe9d2996e01683b2f25260e2c26ebdd84572e11ceb6b57386953b0f21c0b46c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4926
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio Parahaemolyticus Bacteriophage pTD1 Midorikawa,Y. and Sano,M. 2017-07-13 — GenBank