Protein

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Genbank accession
CCI88572.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSIFVGRLGGKSVLSLNAGASTDTNVHINPNADTIFHSDMPFVLVDSTHESALTSIGNGFYVCQMPADIASLKSNDSGRVILTAIEINGTHTGFLNGTQSFVGQTLMYGNDEQRAYSSLSMSSGFASGSSLAHGTYQYISGRGHEESIARNGTGGTILQVAGANIFRPGGVSPGETISICYTLLGFGNGTIVPINASNPNYWNPNWQSPIGAANMGHDWFYVCSSNIRGVTANYGTSRPGNTDLLFSQNATYTVKGSSTNLGNQGTAVRRVQDSYPCTPTKVIWYVLNLKYSDGTMNVAGNPFTGTDIILSPKDFTIKGVKLRETTYKFINQNSFGSLTGRPDMEYIGSNSSYPGVFGDTTGRAAFNASNNGSIITPVSYGGRASQLSIYKFNASKEWYMNTKTTSIGNENGEVWSPRTIPLRLLANNVASSYIGDDINPLLIASGDRYTAQSSVYLGIPNRDTTVILTIEVIMGNINSSGLMVGTFGGTTWPTQGRKAISYTGGDGIFHQILTLPPGELVPFHSTTSYWNTMEYSNSSNMVFMRGGLNYTIKNLGNGYVELGVVTHFPRNTAAFIPRFRVTIQRLT
Physico‐chemical
properties
protein length:587 AA
molecular weight: 63136,89750 Da
isoelectric point:8,46394
aromaticity:0,10221
hydropathy:-0,17819

Domains

Domains [InterPro]
IPR059609
RBD
1–587
IPR059609
CCI88572.1
1 587
Architecture
RBD
RBD 1-587
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CCI88572.1
1 587
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1554
Central domain 11 218 209 0,4530
C-terminal 219 587 368 0,8519
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-218
C-terminal
219-587

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR2-01
[NCBI] 		1206557 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus R201
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI88572.1 [NCBI]
Genbank nucleotide accession
HE956708 [NCBI]
CDS location
range 109210 -> 110973
strand -
CDS
GTGAGTATTTTTGTAGGTAGATTAGGGGGAAAATCGGTATTATCCCTAAACGCTGGGGCATCTACGGATACTAATGTCCATATTAACCCTAATGCCGATACTATCTTCCACTCCGACATGCCATTCGTTCTAGTGGATAGTACTCATGAGAGTGCTTTAACTAGTATAGGTAATGGATTTTACGTTTGTCAAATGCCAGCAGATATAGCCTCGCTAAAGTCTAACGATAGCGGAAGGGTTATACTCACTGCTATTGAAATAAATGGTACTCATACGGGGTTTCTAAATGGAACTCAAAGTTTTGTAGGACAAACGCTAATGTACGGTAATGACGAACAACGAGCTTATAGTTCCTTAAGTATGTCCTCTGGATTCGCATCTGGATCTAGCTTAGCTCATGGAACCTACCAATATATTAGTGGTAGGGGTCATGAAGAATCTATTGCTAGGAACGGAACAGGTGGTACTATATTACAGGTTGCAGGTGCTAATATATTTAGGCCTGGTGGTGTTTCCCCCGGTGAAACTATCAGTATATGCTATACTCTATTAGGGTTTGGTAATGGTACTATAGTTCCTATAAACGCTAGTAACCCTAACTACTGGAATCCAAACTGGCAAAGCCCGATAGGTGCAGCTAATATGGGGCATGACTGGTTCTACGTATGTTCATCTAATATTAGGGGGGTTACTGCCAACTATGGTACCTCTCGCCCTGGTAATACTGATTTGTTGTTTTCACAAAATGCCACTTATACCGTAAAGGGCTCCAGTACAAACTTAGGTAATCAGGGGACTGCTGTACGTAGGGTACAGGATTCATATCCCTGTACTCCCACTAAAGTTATCTGGTATGTGCTCAACTTAAAATATTCTGATGGTACTATGAATGTTGCAGGCAATCCATTTACTGGTACTGATATTATTCTAAGTCCTAAAGATTTTACAATAAAGGGTGTGAAACTTCGTGAAACTACATATAAGTTTATAAACCAGAATAGCTTTGGTAGTCTCACAGGTAGGCCGGATATGGAGTATATAGGTAGTAACTCCTCATACCCTGGTGTTTTTGGTGATACTACTGGTAGGGCTGCTTTCAACGCATCTAACAATGGTAGTATCATCACACCTGTTAGCTACGGTGGTAGGGCATCTCAATTAAGTATCTATAAGTTCAACGCCAGTAAAGAGTGGTATATGAACACAAAAACCACCTCAATAGGCAATGAGAATGGGGAGGTTTGGAGTCCTAGAACAATTCCCCTAAGATTACTAGCCAATAACGTGGCTAGTTCATATATTGGTGACGATATTAACCCATTACTTATAGCTTCTGGTGACAGATATACTGCCCAGTCTAGTGTGTATCTAGGTATACCTAATAGGGATACTACAGTTATTTTAACTATAGAAGTTATTATGGGTAATATCAATAGCTCCGGGCTAATGGTAGGCACATTTGGTGGCACTACCTGGCCTACACAAGGTAGAAAAGCTATTTCATACACTGGTGGCGACGGTATATTCCATCAAATTCTAACTTTACCACCAGGAGAACTGGTCCCCTTCCATTCTACTACATCTTATTGGAATACTATGGAGTATTCCAATAGTTCTAATATGGTCTTTATGCGGGGCGGGTTAAACTACACAATAAAGAATCTAGGTAACGGTTATGTGGAGCTAGGCGTAGTTACTCACTTCCCTAGAAATACTGCTGCCTTTATCCCTAGATTTAGGGTAACTATTCAGAGGTTAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2cf14eb3d46fcfcf454f94b9005c4eed0c285123996b4fa4cb22c4049d2c71bc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2512
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic, physiological and proteomic characterization of the T5-like bacteriophage phiR2-01 infecting Yersinia enterocolitia Pajunen,M.I., Happonen,L.J., Jun,J.W., Malmstrom,J., Nawaz,A., Mattinen,L. and Skurnik,M. 2021-10-28 — GenBank