Protein

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Genbank accession
YP_010659497.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MFPLPDHSSRIICSEGPNPFRIEVAPGLVSFGNVVMNRNSTVHQVVVTNVGDCPVKIGSVRVAGSYRATSNKTGWLNPGEHFLIDVIFAPRVEGIHHGSLYVETNGASGTEYAALLGYGYAAGTDPGGGTDPGEGGEEGGIIPKYFSWIGDGIQTSFPLNGADAYNKYLFDTSQENTVGQKDFHAVNPSDYNIDPPVGAAPATIRFLTPPKDGTIGFAVLRGYAKPYVGEPPLTTVNPGVVSPPTPGTTVDGKYANSLIIVSDATPVRLEIRRNTGDTEKDWKKGDFFSVVQHNTGSVELAIGSGGTLFLPSEFIAKTRGRDATISATCINPDADQWLLSGDLLRGVLTTERHMVVLEDKSRLNGTSVSASTTAVDGIILPFGMKLDPIADGGLSACVLAPTTSGSILTMDIRRNGVSVLQSLITINNNQYTSATATTPPSFIPDGNVFAKGDRLEMYVTQAGAGARGPKVILMGMRQ
Physico‐chemical
properties
protein length:478 AA
molecular weight: 50491,31170 Da
isoelectric point:5,43571
aromaticity:0,07531
hydropathy:-0,10879

Domains

Domains [InterPro]
IPR013783
STR
20–135
IPR013783 DC_0220 DC_2071
IPR013783
STR
21–121
IPR013783
IPR053879
Unmapped
22–109
IPR053879
YP_010659497.1
1 478
Architecture
STR
STR
RBD
STR 20-135 | STR 159-345 | RBD 349-478
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010659497.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 61 61 0,9827
Central domain 62 260 200 0,0940
C-terminal 261 478 217 0,9246
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-61
Central
62-260
C-terminal
261-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Piffle
[NCBI] 		2859656 Uroviricota > Caudoviricetes > Schitoviridae > Pokkenvirus piffle >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010659497.1 [NCBI]
Genbank nucleotide accession
NC_070868.1 [NCBI]
CDS location
range 69431 -> 70867
strand -
CDS
ATGTTCCCGCTCCCTGATCATTCCAGTCGCATCATCTGCTCGGAAGGCCCGAATCCTTTCCGCATCGAGGTGGCACCGGGTCTGGTGTCCTTCGGTAATGTGGTGATGAATCGCAACTCGACTGTGCATCAGGTCGTAGTCACCAACGTCGGTGATTGCCCGGTCAAGATCGGCAGCGTTCGTGTTGCCGGTTCGTACCGTGCTACCTCGAACAAGACCGGCTGGTTGAATCCGGGTGAGCACTTCCTGATCGATGTCATCTTTGCACCACGGGTGGAAGGCATCCACCATGGTTCCCTGTATGTGGAAACCAATGGAGCCAGTGGTACTGAGTACGCTGCCCTGCTGGGTTACGGCTATGCTGCTGGCACTGATCCGGGCGGTGGTACTGACCCCGGTGAAGGTGGTGAGGAAGGCGGCATCATCCCGAAGTATTTCAGCTGGATCGGTGATGGCATCCAGACTTCGTTCCCTCTGAACGGAGCTGACGCCTACAACAAGTACCTGTTCGACACCTCGCAAGAGAACACTGTTGGGCAGAAGGACTTCCATGCCGTCAATCCTTCGGACTACAACATCGATCCTCCGGTCGGTGCAGCTCCTGCCACCATTCGTTTCCTGACTCCACCGAAGGATGGCACCATCGGTTTCGCTGTCCTGCGTGGCTATGCCAAGCCGTATGTAGGTGAGCCACCGCTGACCACGGTCAATCCGGGTGTGGTGTCTCCGCCTACTCCGGGAACCACAGTCGATGGGAAATACGCCAACTCGCTGATCATCGTCAGCGATGCCACTCCTGTTCGTCTGGAGATCCGCCGGAACACTGGCGACACCGAGAAGGACTGGAAGAAGGGTGACTTCTTCTCCGTGGTTCAGCACAACACTGGCTCGGTTGAACTGGCCATTGGGTCCGGTGGCACCCTGTTCCTGCCGTCTGAGTTCATCGCCAAGACCCGTGGACGTGATGCCACGATCTCAGCCACCTGCATCAACCCCGATGCCGATCAATGGCTTCTGAGTGGCGATCTGCTGCGTGGTGTTCTGACCACTGAACGGCACATGGTGGTGCTGGAAGACAAGAGCCGGTTGAATGGAACCAGCGTCTCGGCGAGTACCACTGCTGTGGATGGCATCATCCTGCCGTTCGGTATGAAGCTGGACCCAATTGCGGATGGGGGCTTGAGTGCCTGCGTCTTGGCTCCAACCACCAGTGGTTCGATCCTGACCATGGATATTCGACGCAATGGCGTCTCGGTGTTGCAGTCGTTGATCACGATCAACAACAATCAGTACACGTCCGCAACTGCCACTACCCCGCCATCCTTCATTCCGGATGGCAATGTGTTTGCCAAGGGTGATCGTCTGGAGATGTATGTCACCCAAGCAGGCGCTGGTGCTCGTGGCCCCAAAGTCATTCTGATGGGTATGCGTCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
392cb395ea850f671b646baea0aa4102985f76900573eaaeca05eab49741d448
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7771
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Stenotrophomonas maltophilia phage Piffle Kirchhoff,M., Ortega,C., Clark,J., Liu,M. and Burrowes,B. 2022-04-21 — GenBank