Protein

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Genbank accession
AFV51306.1 [GenBank]
Protein name
putative HNH endonuclease
RBP type
TSP
Evidence DepoScope
Probability 0,55
Protein sequence
MNTAFDAIDFSVAMTNQLFSYDSKTGVIRLKSTGCKIGNLNTADGGTRIECNGKTLSGARVAWIIETGNTIPPGFAVVCRQRTPGHYGNRISNLYLVDVARDPNFYS
Physico‐chemical
properties
protein length:107 AA
molecular weight: 11623,02210 Da
isoelectric point:8,93005
aromaticity:0,09346
hydropathy:-0,17196

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFV51306.1
1 107
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,1103
Central domain 83 96 15 0,0083
C-terminal 97 107 10 0,9973
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-96
C-terminal
97-107

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JL1
[NCBI] 		2681620 Uroviricota > Caudoviricetes > Dhillonvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV51306.1 [NCBI]
Genbank nucleotide accession
JX865427 [NCBI]
CDS location
range 18789 -> 19112
strand +
CDS
ATGAATACTGCATTCGACGCCATCGACTTTTCAGTGGCAATGACCAATCAGCTTTTTTCCTACGACAGCAAAACAGGCGTTATCCGCCTAAAGTCCACCGGCTGCAAGATTGGCAACCTCAATACTGCCGATGGCGGTACTCGTATCGAATGCAACGGCAAGACGCTGTCTGGCGCACGTGTGGCGTGGATTATTGAGACTGGCAATACAATCCCCCCAGGCTTTGCCGTTGTGTGCCGTCAGCGTACGCCGGGCCATTACGGCAACCGGATCAGCAATCTTTATTTGGTAGACGTAGCGCGCGACCCAAATTTTTATTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5130c7719984a8352376b84f062a1d86dcc3a2598579f5e2997414f2cc4d8b3d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7286
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia coli O157:H7 lytic phage JL1 Pan,F., Wu,H., Liu,J., Ai,Y., Meng,X., Meng,R. and Meng,Q. 2013 23760599 GenBank