Protein

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Genbank accession
ACY35916.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAIAVERGYASGSNASATANLDVAIPTAVDVGDWILVFIVTSTATTTVATPTGWTLIAASGAVNTRNFYLFGKRKATGDSATQTFTQASAQLASWTLTYGSGGLTNFAQWVTRQYANDTGQNYPMDRRYTYYVEKGGASSPAGTAATTRVRGMAVPAKSLVLTVMGEATSASETEAQVTLTQGAAKWFYYGGGSSINTHWWSKEYTTTAKTTDDVIVKWPNDNNANGAGIQVAIPELVDTAPVVNFQTGFESGNPLTVGTTANFETTTVSPRKGTTALRRVNNGSFNSHSQVAGSDSFTVPTSGLRAIGYVRTDSSSPFSLAGISFGVAADGTGGVQVLVDSRNGTGGPSVSSIQLRTGTSTVVAGLNVVGAIVSGVVYRIEADLRSDGYVIGRVYEDVTDKFIGKVEGATSVTSGRFGVYGYGAVTYDDLSLSPIPSAPRLSTKMVLPDQTISNVAITYLTAERKSTLLALSTATRVSWFLSF
Physico‐chemical
properties
protein length:484 AA
molecular weight: 50710,85280 Da
isoelectric point:7,76844
aromaticity:0,09298
hydropathy:-0,02190

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ACY35916.1
1 484
Domain Start End Length (AA) Confidence
N-terminal 1 396 396 0,0219
Central domain 397 473 78 0,2881
C-terminal 474 484 10 0,9795
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-396
Central
397-473
C-terminal
474-484

Taxonomy

  Name Taxonomy ID Lineage
Phage Clavibacter phage CMP1
[NCBI] 		686439 No lineage information
Host Clavibacter michiganensis subsp. michiganensis
[NCBI] 		33013 Bacteria > Actinobacteria > Actinobacteria > Micrococcales > Microbacteriaceae > Clavibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ACY35916.1 [NCBI]
Genbank nucleotide accession
GQ241246 [NCBI]
CDS location
range 17593 -> 19047
strand +
CDS
ATGGCAATTGCAGTAGAGCGCGGATATGCCTCTGGGTCCAACGCAAGTGCAACAGCAAATCTTGATGTTGCAATTCCTACAGCCGTGGACGTTGGCGACTGGATTCTCGTTTTCATTGTCACCTCAACTGCGACTACGACGGTAGCAACGCCGACAGGCTGGACGCTAATTGCAGCTTCGGGTGCAGTCAACACTCGAAACTTCTACCTGTTTGGGAAGCGCAAGGCGACGGGAGATTCGGCAACTCAGACCTTTACGCAGGCAAGTGCGCAGCTTGCTTCCTGGACGCTGACATACGGCAGCGGAGGTCTTACGAACTTCGCGCAGTGGGTGACGCGACAGTACGCAAATGACACCGGTCAGAACTACCCGATGGACCGACGCTACACATATTACGTGGAGAAGGGCGGAGCGAGTTCCCCCGCGGGGACCGCTGCTACTACGCGCGTGCGTGGAATGGCAGTTCCGGCTAAGTCACTTGTGCTCACAGTCATGGGTGAGGCAACAAGCGCATCCGAAACTGAAGCTCAAGTCACACTCACGCAGGGTGCAGCCAAGTGGTTCTACTACGGCGGCGGAAGCTCAATCAATACGCATTGGTGGAGCAAGGAATACACCACGACGGCGAAGACCACGGACGACGTTATCGTAAAGTGGCCGAACGATAACAATGCGAATGGTGCGGGAATTCAGGTTGCTATTCCTGAGCTTGTTGATACCGCCCCTGTCGTAAACTTCCAGACTGGATTCGAGTCGGGCAACCCTCTCACCGTCGGAACGACTGCCAACTTTGAGACCACGACAGTTAGCCCACGCAAGGGTACGACAGCGCTTCGCCGCGTAAACAACGGAAGCTTTAACTCCCACTCTCAGGTCGCAGGGTCGGACTCGTTCACTGTGCCTACGAGCGGACTTCGAGCGATTGGGTACGTTCGGACGGATAGCTCTAGTCCATTTTCTCTTGCTGGAATTTCTTTTGGCGTAGCTGCGGATGGAACCGGCGGTGTCCAGGTTTTGGTTGACAGCCGCAACGGAACTGGCGGACCTAGCGTTTCGAGCATTCAGCTTCGAACGGGCACAAGCACGGTCGTCGCCGGGCTTAACGTAGTCGGAGCTATTGTTTCCGGAGTCGTGTATCGCATTGAGGCAGATTTGCGCTCAGACGGATACGTGATTGGTCGAGTTTACGAAGATGTGACTGACAAGTTCATCGGAAAGGTCGAGGGCGCTACCTCCGTAACCTCTGGTCGCTTTGGCGTTTACGGCTATGGCGCTGTCACGTACGATGACCTTTCGCTGTCCCCGATCCCCAGTGCGCCCCGGCTTTCAACTAAAATGGTCCTTCCAGATCAGACAATTTCAAACGTCGCTATCACGTATTTGACGGCGGAAAGGAAGTCAACCCTACTCGCCTTGAGTACAGCCACAAGGGTGTCCTGGTTCCTGAGCTTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a3ad266bd54e0458a75db2fd4dfc6dde2e9478cc0f8878ad83bedecc1b41814
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6830
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The endolysins of bacteriophages CMP1 and CN77 are specific for the lysis of Clavibacter michiganensis strains Wittmann,J., Eichenlaub,R. and Dreiseikelmann,B. 2010 20447991 GenBank