Protein

View in Explore
Genbank accession
QXV85446.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MGIIMAKTITNIPKDITNLKNGKLDKSANLSDLADREVAWLNVRPIGPTPLAGDPVDDLDATTKRWVQNKFDNGIANTSWSVINADQSAPAVATVVVGGKVESKYTNPSSSQFARLYSSSSWGSSSYAVVEAEGSSKHAYKFYENGTVDFRQSGKTNPFRMYTNIGTWSDITDATVSNLTTNGMDRVAISSGSDTLVRGYSISATKPNGYPTKVGYHMYIPGNDAFGIACMVIGGDNGKFCRYFFDIDGQIYGSTDYGNFSYTKNGTSDSRVKHGIAPVGVDKSYSNIKGLEFVEFIYDNDEQNRVRHGVIAQQAEVVEPLYVKTRKYVGNNPGEIVEQKELDTTPMLLDTMHVVQELIKRIESLQEDNKKLKELISNLNNSQTTDLP
Physico‐chemical
properties
protein length:388 AA
molecular weight: 42649,11460 Da
isoelectric point:5,66011
aromaticity:0,09021
hydropathy:-0,45954

Domains

Domains [InterPro]
DC_0253
STR
5–387
DC_0253
IPR030392
CHP
268–320
IPR030392 Coil
IPR030392
CHP
268–369
IPR030392
QXV85446.1
1 388
Architecture
STR
STR 5-387 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV85446.1
1 388
Domain Start End Length (AA) Confidence
N-terminal 1 66 66 0,9900
Central domain 67 265 200 0,1113
C-terminal 266 388 122 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-66
Central
67-265
C-terminal
266-388

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage VogelGryff
[NCBI] 		2851989 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV85446.1 [NCBI]
Genbank nucleotide accession
MZ501110.1 [NCBI]
CDS location
range 21306 -> 22472
strand +
CDS
GTGGGCATAATTATGGCTAAAACTATCACAAACATACCAAAAGATATCACTAACCTTAAAAACGGTAAGTTAGATAAGAGTGCAAACCTTAGCGACTTAGCAGATCGCGAAGTTGCCTGGTTAAACGTGCGTCCTATTGGACCTACTCCTCTTGCGGGGGATCCTGTGGACGACCTTGACGCAACTACAAAACGTTGGGTGCAGAATAAATTTGACAATGGTATCGCCAATACATCATGGAGCGTAATAAACGCAGACCAAAGCGCGCCAGCAGTAGCCACCGTGGTTGTCGGCGGGAAAGTAGAGTCAAAATATACCAATCCTAGTTCATCACAGTTTGCACGTCTGTACTCAAGTTCTTCATGGGGTTCTTCTAGTTATGCTGTTGTAGAGGCAGAGGGTTCTTCCAAGCACGCTTATAAATTCTATGAGAATGGCACAGTTGACTTCCGACAGTCAGGGAAGACCAACCCATTCCGCATGTATACAAATATTGGAACATGGAGTGACATAACGGACGCCACGGTATCCAACTTGACAACTAACGGAATGGACAGGGTGGCCATTTCGAGCGGCTCAGATACTCTGGTGCGCGGATATTCTATCAGCGCCACCAAACCTAATGGATATCCAACAAAGGTTGGATATCACATGTATATTCCAGGCAATGATGCATTTGGTATAGCTTGCATGGTAATCGGTGGAGATAACGGAAAATTTTGCCGTTACTTTTTTGACATTGATGGTCAAATATATGGTTCGACCGATTACGGGAACTTCAGTTATACGAAAAATGGCACTTCTGACTCACGTGTAAAACACGGCATCGCCCCTGTTGGAGTTGACAAATCATACTCTAATATTAAAGGGCTGGAATTTGTAGAGTTCATTTATGATAATGACGAACAAAATCGAGTTCGGCATGGCGTGATTGCACAGCAAGCAGAGGTTGTTGAGCCTTTATATGTCAAGACGCGCAAATATGTTGGCAATAATCCAGGAGAGATTGTTGAACAAAAGGAACTTGACACAACACCTATGCTTTTGGACACTATGCATGTCGTGCAAGAACTTATAAAACGGATTGAATCTTTGCAAGAAGATAATAAGAAACTAAAAGAACTCATTTCTAATCTAAACAATTCACAGACTACAGATCTTCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dd0107c604c9b8a29a62acddcff093fa582ba5ffbf580e67ccbd16cb59c496e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6797
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank