Protein

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Genbank accession
XYM48546.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,75
Protein sequence
MFEILLSSGAMERAPYVPFYMRTKKVADLPVGIAGPIVAMDNDNLYVVGGQDSTGAIRSATEIFKLSDMSMTVGGNHARTISINGATIYNNRMLIPGGQFSTNLAGLLSTTGALNLPGLTSAVELTGRLPQTSYGNAVCQHRGDIYVLPSYKAGFYKLNPLTGATLENYPGLPSFDDVGGGILAGMSIFGHGDYIYCLGGWANNQNLRIHRFNLISKQWELWQTMDPAYHHVWHGGFIDEEGYYNYTGWGNLGQGNKIYLHRYNPVKKSWARSSDTGLSYRNMSGVIGLKDDIYIVGGTSESFSTNWTSTTNKIKEIYKVSRAPENWEPVPEKTWVRKADMPGGRVQAAVASTYSELFVMFGSDGAVKNTNLIYDVFTDTWKEGPVKPSARYQSAATTVADQILIFSGSNYSPDLYSYNHLEDKWSDSISEPNAPTWRTNHCMTSFGRYAYLFGDDGRTDRAIYRYSLDAAAGSKWYKLPQLAPEGLARAAMVIVNNKLYIACGWISSNTMTKTIRVLDLVAGTWSTISNVPASFVARVGCLLAAIDNKLYIGGGASPSTGLNDFWEYDTVSGAWTRLPDIPINGDAAMMAACADTLYIAGGNRPNGVKGNELYAYRP
Physico‐chemical
properties
protein length:618 AA
molecular weight: 67697,61020 Da
isoelectric point:6,79973
aromaticity:0,11650
hydropathy:-0,21553

Domains

Domains [InterPro]
IPR015915
STR
16–152
IPR015915 IPR015915 IPR011043
IPR015915
STR
24–225
IPR015915 IPR015915 IPR015915
IPR015915
STR
25–225
IPR015915 IPR011043
IPR006652
STR
44–91
IPR006652 PF24681
IPR006652
STR
356–401
IPR006652 IPR052392
IPR006652
STR
498–548
IPR006652 IPR006652
XYM48546.1
1 618
Architecture
STR
STR 16-618
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM48546.1
1 618
Domain Start End Length (AA) Confidence
N-terminal 1 15 15 0,8733
Central domain 16 368 354 0,9255
C-terminal 369 618 249 0,1061
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-15
Central
16-368
C-terminal
369-618

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiHQ
[NCBI] 		3402740 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM48546.1 [NCBI]
Genbank nucleotide accession
PV029745 [NCBI]
CDS location
range 12826 -> 14682
strand +
CDS
ATGTTCGAGATATTACTCAGTTCTGGTGCAATGGAGAGAGCTCCATATGTACCCTTTTATATGCGAACCAAGAAGGTAGCTGACCTTCCAGTGGGTATTGCAGGTCCAATCGTTGCAATGGATAACGATAACTTATATGTAGTTGGCGGTCAAGATTCTACTGGGGCTATCCGCTCTGCAACTGAAATATTTAAACTATCTGATATGTCGATGACTGTTGGTGGAAACCACGCTAGAACTATTTCCATCAATGGAGCAACTATTTATAATAATAGAATGCTAATACCAGGCGGCCAATTTTCTACTAATTTAGCTGGTCTTTTATCAACGACAGGTGCATTGAATTTACCTGGGTTAACTAGTGCAGTTGAGTTAACGGGACGTTTACCACAGACGTCGTATGGGAATGCTGTATGTCAGCATAGAGGGGACATATATGTTTTACCCAGTTATAAAGCCGGATTCTATAAATTAAATCCACTTACTGGCGCGACTCTTGAAAATTATCCAGGATTACCAAGTTTTGATGATGTCGGTGGTGGGATATTAGCAGGTATGTCAATTTTTGGACATGGAGATTATATCTATTGTTTGGGTGGATGGGCAAATAATCAGAACCTAAGAATACATCGATTTAATCTGATTTCCAAACAATGGGAATTATGGCAGACAATGGACCCTGCGTATCACCATGTATGGCATGGTGGTTTTATTGATGAGGAAGGTTACTATAACTATACCGGCTGGGGTAACCTCGGTCAAGGTAACAAAATATACCTCCATCGTTATAATCCAGTCAAAAAATCTTGGGCGCGCTCGTCGGATACCGGATTATCATATCGAAACATGTCGGGTGTTATTGGACTAAAAGATGATATTTATATTGTCGGTGGTACATCTGAATCATTCTCTACTAATTGGACTAGCACAACAAATAAAATAAAAGAAATCTACAAGGTATCTCGTGCTCCCGAAAACTGGGAACCTGTCCCAGAGAAAACATGGGTAAGAAAAGCAGACATGCCTGGCGGTAGGGTGCAAGCAGCCGTAGCAAGTACTTATTCAGAACTGTTCGTTATGTTTGGTAGTGATGGTGCAGTAAAGAATACAAACTTGATTTACGATGTATTTACTGATACGTGGAAAGAAGGACCAGTTAAACCATCCGCACGTTATCAATCGGCAGCCACAACTGTCGCCGACCAGATTCTTATTTTCTCTGGTAGTAACTATTCTCCAGACCTGTATTCTTATAACCATCTAGAAGACAAGTGGAGTGACAGTATATCTGAACCAAACGCACCCACATGGCGGACAAACCACTGCATGACATCTTTTGGTAGATATGCCTATCTTTTTGGTGATGATGGACGTACCGATAGAGCTATTTATCGTTATAGTTTAGATGCTGCGGCTGGAAGCAAATGGTATAAATTACCTCAACTTGCTCCAGAAGGATTGGCTAGAGCGGCAATGGTTATTGTGAATAATAAACTTTACATTGCCTGTGGTTGGATTAGTTCCAACACCATGACTAAAACCATTCGTGTTCTTGATTTGGTCGCTGGTACATGGTCTACCATATCTAACGTACCCGCCAGCTTTGTTGCTCGTGTAGGTTGTCTATTAGCTGCGATTGATAATAAACTTTACATAGGTGGTGGCGCTAGTCCAAGCACTGGATTGAATGATTTCTGGGAATATGATACAGTCAGTGGTGCGTGGACAAGACTCCCCGACATTCCTATAAACGGTGATGCTGCTATGATGGCTGCATGTGCTGATACCTTATATATCGCTGGCGGTAATAGGCCAAACGGTGTGAAAGGTAATGAGCTCTACGCATATAGGCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4a491dd50dd84feb847b41c39eb3b0eb6f46c20dd903ab95efa90f1c0ced006
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8068
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of Phikzvirus realted Pseudomonas phage phiHQ: A Promising Candidate Against Uropathogens Qamar,H., Khan,M.S.I., Afzal,S. and Malik,K. 2022-09-14 — GenBank