Protein

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Genbank accession
AGO49696.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MKKTIYILSILLLTISGVSAQTVIKIKQPNPQQITIADDSIKLNGSTSVPLSDIIKPITLAEYNAMDAATKLKNAGRQIIDPTGVPTAISIVDGSVSTAKIANSAVSGIKILDEAITESKIADASITDAKINADTYNKLYYAVPDGYISPRDYGAVLDGVTDDRAAFVATLAAANTLGKRIRIDADKMFLDVEETGTKSIFIPDNTWIEGSNKDVQIVVNNILSPAFYLALVDNVTIKDITFTYDQTYDPTYGEDATNFAADFTINQQQVRDYLRDNKAIDFSGVFPVDNGFVSYYYMFLLEAAENVTFDNVTFKSKGETADTFITGVIKMKEQYQPSQTVSNTSAPRTQCKNISLSNIVIDGALMGIQGLVDGFTVNNLKSYRYSDMQDASGNYLGGFDGVDYDFPPPHLFYLNNSSSSTFNTKNVNINDVYDYGKYVGTASVRGTSGINIGYCNSLKLVETQDNVHVSNYKSFRRDGMADIGILSNSSFSNMYSESTTDIFSSTSSYPALRFLGNLTNVVFDNIIIKDNSTTSAIYPIDYGEGNFVTWNNVHVFVKTLNTIDVGTFGIWGSNNKITNSSFNIENHTSTQTLRGIVLNNSTTRDSGANNYYDVTLNGWRDISSDPLNRKSRMLFATAVNTNNNYARVHDTRNNFVIEQVNEIETDTWTRTETVSLGSGTQQALTMTIPSGFAVKKATAIVTSALDAGVTASIGTVSGVATNLIASISNTANSINSNDLNEISNGSLRQIFIRTSTGTFASTGTVKVTLVLTRTSLN
Physico‐chemical
properties
protein length:777 AA
molecular weight: 84546,32630 Da
isoelectric point:4,89761
aromaticity:0,09138
hydropathy:-0,15624

Domains

Domains [InterPro]
DC_0140
STR
8–359
DC_0140 DC_0969
IPR012334
STR
137–396
IPR012334
IPR011050
STR
158–384
IPR011050
AGO49696.1
1 777
Architecture
STR
RBD
STR 8-396 | RBD 407-777
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGO49696.1
1 777
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,8590
Central domain 162 659 499 0,9936
C-terminal 660 777 117 0,9895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-659
C-terminal
660-777

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi13:2
[NCBI] 		1328030 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host Cellulophaga baltica 13
[NCBI] 		1348583 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGO49696.1 [NCBI]
Genbank nucleotide accession
KC821633 [NCBI]
CDS location
range 33529 -> 35862
strand +
CDS
ATGAAAAAAACAATTTACATATTATCGATTTTATTGCTCACTATTTCAGGAGTAAGCGCACAGACTGTTATTAAAATAAAACAGCCTAATCCGCAACAGATAACAATAGCAGACGATTCAATAAAACTGAATGGTTCAACTTCTGTTCCTTTGTCTGATATAATTAAGCCTATCACATTAGCGGAGTACAACGCAATGGATGCGGCTACTAAATTAAAGAATGCAGGACGTCAAATTATAGACCCTACAGGAGTTCCTACAGCTATAAGTATTGTTGATGGTAGTGTTAGTACTGCTAAGATTGCAAATAGCGCTGTGAGTGGAATTAAAATACTTGATGAAGCGATAACAGAAAGTAAAATAGCTGATGCAAGTATAACGGATGCAAAAATAAACGCTGATACATATAATAAATTATATTATGCTGTTCCTGATGGATACATTTCGCCAAGAGATTACGGAGCAGTTTTAGATGGAGTAACCGATGACCGTGCGGCTTTTGTTGCTACATTAGCGGCTGCTAATACTTTAGGTAAGAGAATTAGGATTGATGCTGATAAAATGTTTTTAGATGTTGAAGAAACTGGAACTAAATCGATATTCATACCAGATAACACATGGATAGAAGGTAGCAATAAGGATGTTCAAATCGTAGTTAACAACATATTAAGTCCTGCTTTTTACTTGGCTCTAGTTGATAATGTAACTATAAAAGATATCACTTTCACTTATGACCAAACATATGATCCTACATATGGAGAAGACGCAACTAATTTTGCGGCAGACTTTACTATTAATCAGCAACAAGTAAGAGACTACTTAAGAGATAATAAAGCGATTGATTTTTCAGGTGTTTTTCCTGTAGATAACGGCTTTGTTAGTTACTATTATATGTTTTTATTAGAGGCTGCCGAAAACGTAACTTTTGATAATGTAACATTTAAGTCTAAAGGTGAAACGGCTGATACTTTCATTACCGGAGTTATAAAAATGAAAGAACAATACCAACCAAGTCAAACAGTTTCAAATACTTCGGCTCCAAGAACTCAATGTAAAAACATATCATTAAGCAATATAGTTATAGATGGTGCTTTAATGGGAATACAAGGATTAGTTGATGGTTTTACTGTTAACAATCTAAAATCATATCGTTATTCAGATATGCAAGATGCAAGCGGCAACTATCTAGGTGGTTTTGATGGTGTTGATTATGATTTTCCTCCACCTCATTTATTCTATTTAAACAATAGCTCATCATCTACATTCAACACAAAAAACGTTAACATAAATGATGTTTACGATTATGGTAAGTATGTAGGAACAGCAAGTGTGAGAGGAACAAGCGGTATCAATATAGGATATTGTAATTCTCTTAAATTAGTTGAGACACAAGATAACGTTCATGTTAGCAATTATAAATCTTTTCGCAGGGATGGAATGGCGGATATAGGAATACTTTCTAATAGCTCTTTTTCTAATATGTATTCAGAGTCTACTACGGATATTTTTAGTTCAACATCTAGTTATCCTGCTTTAAGGTTTTTAGGGAACTTAACAAATGTTGTTTTTGATAATATCATAATAAAAGACAACTCAACTACATCGGCAATATACCCAATAGATTACGGTGAGGGTAATTTCGTCACATGGAACAATGTACATGTATTTGTAAAGACACTTAACACTATAGACGTAGGTACTTTTGGAATTTGGGGTTCAAATAACAAGATAACAAACTCTAGCTTTAATATAGAAAATCATACGTCTACACAAACTTTAAGAGGTATAGTTTTAAATAATTCAACAACTAGAGACTCTGGAGCAAACAATTACTACGATGTAACATTAAACGGTTGGAGAGATATATCTAGTGATCCTTTAAATAGGAAATCAAGAATGCTTTTTGCTACGGCTGTTAATACAAATAACAACTATGCTAGAGTTCATGACACTAGAAATAATTTTGTAATTGAGCAAGTAAACGAGATAGAAACAGATACATGGACTAGAACAGAAACAGTATCACTAGGTAGCGGAACACAGCAAGCGTTGACAATGACAATACCTAGTGGATTTGCCGTAAAAAAAGCAACTGCAATAGTGACAAGTGCTTTAGATGCAGGTGTTACAGCTTCAATAGGAACAGTTTCGGGTGTTGCGACTAACTTAATAGCGTCAATATCTAACACAGCGAACTCAATAAACTCTAATGATTTAAACGAGATTTCTAATGGTAGTTTGAGGCAGATATTTATAAGAACAAGTACAGGAACTTTCGCAAGTACAGGAACGGTTAAGGTGACTTTAGTATTAACACGTACATCATTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f6f78477b125090441ddd90b53e8e1269d87dc40904fe10e20ea5c636e61c1cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6995
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50