Protein

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Genbank accession
QEM42591.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYGIWTQPVGPGPATPAPLFIDSGSTFPQFKNSIRGSFNFNGAGRSFPISGWDGSGQIVIVPTGSLCWQWEVPPNLVPDVYCVNNIYVENASSFRVTLNQNPGGNPLFDCGFNVYQIWPRADRNYGITFSNTADYFSISDAGVVGQCIWAWQGVINNALQIPNIGGFNMTNAVVFANWSDGGLGLSYTSDDRVIRVYQNRPYVNGNTNEGGSVFARIAVFCNGAGVPEHNGGLNIYSPGTTQCVFSTNRTPFTVDTFIGSGGGNTGMAYPMIPLTSGIGAIKGQGSGWRYQQMRSHTMSGSSIGTGYGRYLFQWNQNYDLGADTVVNLSVPVINAAKVFAGL
Physico‐chemical
properties
protein length:343 AA
molecular weight: 36827,72350 Da
isoelectric point:6,07117
aromaticity:0,13120
hydropathy:-0,08280

Domains

Domains [InterPro]
DC_1434
ATT
1–40
DC_1434
IPR045604
STR
22–316
IPR045604
QEM42591.1
1 343
Architecture
ATT
STR
ATT 1-40 | STR 41-316 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEM42591.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0270
Central domain 11 209 200 0,0091
C-terminal 210 343 133 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SGF2
[NCBI] 		2601630 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus SGF2
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEM42591.1 [NCBI]
Genbank nucleotide accession
MN148435 [NCBI]
CDS location
range 22725 -> 23756
strand +
CDS
ATGGCATATGGAATATGGACACAACCAGTAGGGCCGGGGCCAGCAACCCCCGCTCCCTTGTTTATTGATAGCGGAAGTACTTTCCCTCAGTTCAAGAACAGTATAAGAGGGAGCTTTAACTTTAATGGAGCTGGGAGATCTTTCCCTATTAGTGGATGGGATGGTAGTGGTCAGATAGTTATTGTTCCCACTGGTTCTCTGTGCTGGCAATGGGAAGTCCCTCCTAACTTAGTCCCTGATGTTTATTGTGTAAATAACATCTATGTAGAAAATGCCTCATCTTTTAGGGTTACTCTGAACCAGAATCCCGGCGGCAATCCTTTATTTGACTGTGGATTCAACGTCTACCAGATTTGGCCTAGAGCTGATAGAAACTATGGGATAACTTTCTCAAATACAGCAGACTACTTTTCCATATCAGATGCTGGGGTTGTTGGTCAATGCATTTGGGCTTGGCAGGGGGTCATAAACAATGCCCTTCAGATACCAAATATCGGTGGGTTCAATATGACCAATGCTGTTGTATTTGCTAATTGGTCTGATGGAGGACTCGGGCTGTCTTATACCTCTGATGACAGAGTTATTCGTGTCTACCAGAACAGACCTTACGTAAACGGCAACACTAATGAGGGTGGTTCTGTGTTTGCTAGAATTGCAGTATTCTGCAATGGGGCAGGTGTTCCGGAACATAATGGAGGTTTAAATATCTACTCTCCGGGAACCACTCAATGTGTATTTTCTACTAACAGAACACCTTTCACTGTGGATACTTTTATAGGCTCAGGAGGTGGTAACACTGGAATGGCGTACCCTATGATACCTCTTACTTCTGGAATAGGTGCAATAAAAGGCCAAGGTAGTGGGTGGAGATACCAGCAAATGAGATCTCACACAATGAGTGGCTCTAGTATAGGAACTGGTTATGGAAGGTACTTATTTCAGTGGAATCAAAATTACGATCTAGGGGCTGACACTGTTGTTAACTTATCAGTTCCTGTAATAAACGCAGCTAAGGTTTTTGCTGGACTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
897043b2f790783019065d46b9c252d49910e002da420263173c789359bb9061
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7753
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of SGF2, a novel phage infecting Shigella flexneri Lu,H., Liu,X., Lu,M. and Liu,H. 2022-05-06 — GenBank