Protein

View in Explore
Genbank accession
XRA40035.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDFAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYNFSNNETVNFGGKTLTIDCKAKFIGDGMLIWEQLGEGSVVNQPHMQTQTTPYTVYRFDDNGNWVTNPSTVLASVAQRMDKGYKPSVNDLDIWTNLPDNVKNQVAGATLRIMSGDNIIVENPEATFGGYLFTLCNRILVKNPRNFIAWESGITFENHQTAAWGTGNWVVGGEIKYGSGSAVLFIRNDGGDDHNGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDVNADTGAPTERVDDYTLAEYPWFHLPTQHIIRNIITRDCMGIGAWWDGQKNIIDNVVTYEAHKEGIFDRGTNNDITNVTVIGANKDLTNLNQLTCEGGSRLRGVMIHAYSTQGYAVYAPGSEISSVSCAGSGTKKILCTYVGDIQGGNINVQHGDNDMTLAMRPAMGGTINPSLLMTASCQVASPGNEASIVKLSAIQGGERVGEMQLNRLGFKHMSIPVASLQLPESALEHNSSIGFFFGSDGVLRILAKKPDGTYVTYTLS
Physico‐chemical
properties
protein length:676 AA
molecular weight: 73137,96400 Da
isoelectric point:5,06182
aromaticity:0,09024
hydropathy:-0,24645

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–136
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
71–131
IPR040775 IPR011050
IPR015331
RBD
138–675
IPR015331
XRA40035.1
1 676
Architecture
ATT
STR
ATT 65-136 | STR 137-675 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRA40035.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9940
Central domain 155 582 429 0,9812
C-terminal 583 676 93 0,9311
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-582
C-terminal
583-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PK2
[NCBI] 		3414262 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRA40035.1 [NCBI]
Genbank nucleotide accession
PV446483.1 [NCBI]
CDS location
range 38530 -> 40560
strand +
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGCGGTGTAGCTGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCGGCATCTTTTAATTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCAGATAAAGCAGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTGCGACCGGCGGCATTTCGGATTTCGCTTGGGACGCGTTCGGGGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAGTACTCCGTTAAGCTGTCTGACTTTACTACGTTACAACAATTGGCGGATGCCGCTGTTGATAGTGTTCTTATCGACCGCGATTACAACTTCAGCAACAATGAGACCGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGATGGCATGTTAATATGGGAGCAACTCGGCGAAGGGTCTGTTGTGAACCAGCCGCACATGCAGACACAAACCACGCCGTACACGGTGTATAGATTCGACGACAACGGTAACTGGGTGACTAACCCATCAACGGTGCTGGCGTCGGTAGCCCAAAGGATGGATAAGGGGTATAAGCCAAGCGTTAACGATTTAGATATTTGGACCAACCTTCCTGATAATGTAAAAAATCAGGTTGCTGGTGCAACTTTGCGAATAATGAGCGGCGATAATATCATCGTAGAGAACCCAGAAGCTACATTTGGTGGGTATCTGTTCACACTCTGTAATCGTATTCTCGTAAAAAATCCACGTAATTTTATTGCCTGGGAGTCTGGTATTACATTTGAGAACCATCAAACAGCCGCATGGGGTACTGGTAACTGGGTGGTCGGTGGTGAGATAAAATACGGTTCTGGTTCTGCAGTTTTATTTATCAGAAATGACGGTGGTGATGATCACAATGGAGGGGTAAGGGATTTAATATCATATCGCGTTGGCGAATCTGGTGTTAAGACATATCAGAATGAAATCGGGGGACGGTCAGCCAGGAACTACCGTTTGGTGTTCGACAATATAACTACAATCCAGTGTTATTATGATGGGATTGATGTTAATGCTGACACGGGGGCGCCAACCGAACGTGTAGACGATTACACTCTTGCTGAGTACCCATGGTTCCATTTACCTACTCAGCACATCATCCGCAATATCATTACACGTGACTGTATGGGTATCGGCGCGTGGTGGGATGGGCAAAAAAATATCATTGATAATGTTGTAACCTACGAAGCCCATAAAGAGGGGATTTTCGACAGGGGTACTAACAATGATATTACTAATGTAACAGTTATAGGTGCAAACAAGGATTTAACTAACCTAAATCAGCTTACATGCGAAGGCGGCAGCAGATTGCGCGGAGTGATGATTCACGCATACTCTACACAAGGGTATGCCGTATACGCGCCGGGTTCCGAAATATCGTCTGTTTCGTGCGCGGGTTCTGGTACGAAAAAGATACTTTGTACGTATGTTGGTGATATTCAGGGTGGGAACATAAACGTACAGCATGGTGATAACGACATGACCCTGGCTATGCGCCCGGCAATGGGGGGCACAATAAATCCATCATTACTTATGACAGCAAGTTGCCAAGTAGCATCGCCTGGTAATGAAGCTAGTATTGTCAAGCTTTCGGCAATCCAGGGAGGGGAGCGTGTGGGTGAGATGCAGCTTAACCGCTTAGGCTTTAAGCACATGAGCATACCTGTTGCGTCTTTACAATTACCAGAAAGTGCTTTAGAACATAACTCATCTATAGGCTTTTTCTTTGGAAGTGATGGGGTGCTGAGAATCCTCGCCAAGAAACCAGACGGGACTTACGTAACCTACACCTTATCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c326688e37a9f50b0b3574f67225c28bba152b11173eef8a3190d8488434bf21
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7150
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50