Protein

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Genbank accession
QCW22878.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,72
Protein sequence
MAQWNKINQDYLNQERSLFEVYMCADRYGNIDNCGGTASGSGAFGEQIVSQIYPIFQLDAIYGLNSDRFELFTNGTGITTSSTLMQVESGTGAYGYGVIRSKRAVRYRPGQGALGRFTAQFSGIATGYTQRAGFFSQEQALQVGYSTEGKFGFLRANGGKAHIHRFLITTPASGTENITVTLAGIATTVSIGAGTSTQNATGIGTHTYNGWIVDRQNGYLDFLSTTVGPLSGTFSIVSDGDLVATGSTSQVGVNQTNEWTYQEDWNHDTLTGVGGSTNPSNMKIDPTKLNVYQINYRWLGVGEIRLAVENQQTGDIMPVHHVHYTNQNNNVHLDNPSLKIGYVAAELDGNTGAGVTVSGASMMGAIEGLVNTTTNPIAAFRSKTGGMNTTNIKYHLLSLKGSLIDNNKINQRELLIKKVSALTTASSTAPCFLYLYLDAPTDNPLDYEPLGNASSYSRSDAQIIGGEPIAVFCVTNGAPETIDLESLRIVLPPQKTLTMAISSASNLQVAECAVTFIED
Physico‐chemical
properties
protein length:519 AA
molecular weight: 55668,44100 Da
isoelectric point:5,33152
aromaticity:0,08671
hydropathy:-0,18478

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW22878.1
1 519
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,0133
Central domain 137 335 200 0,4017
C-terminal 336 519 183 0,9968
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-335
C-terminal
336-519

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B05
[NCBI] 		2484637 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW22878.1 [NCBI]
Genbank nucleotide accession
MK799832 [NCBI]
CDS location
range 48421 -> 49980
strand +
CDS
ATGGCTCAGTGGAATAAGATTAATCAAGATTATCTAAACCAAGAAAGAAGTTTATTTGAAGTATACATGTGTGCCGACAGATACGGCAACATTGATAACTGTGGTGGAACTGCAAGTGGAAGTGGTGCATTTGGAGAACAAATTGTCTCTCAAATTTATCCAATATTTCAACTTGATGCCATATATGGTTTAAACTCAGATAGGTTTGAATTATTTACAAATGGGACTGGTATAACCACTTCTTCAACTCTCATGCAAGTTGAAAGTGGAACTGGTGCTTATGGGTATGGTGTTATTCGTTCTAAAAGAGCAGTAAGATATCGTCCAGGACAAGGTGCTCTTGGAAGATTTACAGCACAGTTTTCTGGTATTGCAACAGGGTATACACAAAGAGCAGGTTTCTTCTCTCAAGAACAAGCACTTCAGGTCGGATACAGCACTGAAGGAAAGTTTGGTTTTTTAAGAGCAAATGGTGGTAAGGCACATATTCATAGATTTCTCATCACAACACCAGCGAGTGGTACAGAAAATATTACAGTAACACTTGCTGGAATTGCAACCACTGTTAGTATTGGTGCAGGAACATCAACTCAAAATGCAACTGGTATTGGAACACACACATATAATGGATGGATAGTTGATCGTCAAAATGGATATCTAGATTTCTTATCTACAACTGTTGGTCCATTATCAGGAACATTTTCAATCGTAAGTGATGGTGATCTTGTAGCAACAGGATCAACCTCTCAGGTAGGAGTAAATCAAACAAATGAATGGACATACCAAGAAGATTGGAATCACGATACTTTAACTGGTGTTGGTGGAAGTACAAATCCATCTAATATGAAAATAGATCCAACAAAGTTAAATGTATATCAAATTAATTATCGTTGGTTGGGTGTTGGTGAAATAAGACTAGCTGTTGAGAATCAACAAACTGGCGATATTATGCCTGTCCATCATGTGCATTATACTAACCAAAATAATAATGTCCACTTAGATAATCCATCACTCAAAATTGGTTATGTAGCTGCTGAATTAGATGGCAATACTGGTGCTGGTGTAACAGTATCTGGCGCATCTATGATGGGTGCGATTGAAGGTCTTGTGAATACAACAACTAATCCAATCGCTGCCTTTAGATCAAAGACTGGTGGAATGAATACCACTAACATAAAATACCATCTTTTAAGTTTAAAGGGTAGTTTGATTGACAATAATAAAATTAATCAGAGAGAACTCTTAATCAAAAAAGTAAGTGCTCTAACAACAGCATCATCAACAGCACCTTGTTTTCTATACTTATATCTTGATGCTCCAACTGACAATCCTCTTGATTATGAACCTCTTGGAAATGCATCATCATATTCAAGATCTGATGCTCAAATTATTGGTGGAGAACCAATAGCAGTATTTTGTGTCACAAACGGTGCTCCAGAAACAATTGATCTTGAGTCACTAAGAATTGTTTTACCACCACAAAAAACACTTACAATGGCAATTTCTTCTGCTTCTAACCTACAAGTGGCAGAATGTGCTGTTACTTTTATTGAGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
29c0d2eaa1357b32e77d1f4a1dd4afc31ef26521d53ece8a8a4ccaf014c69f95
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7730
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-B05 from the Bohai Sea, China Jiang,T. 2020-10 — GenBank