Protein

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Genbank accession
XGD05849.1 [GenBank]
Protein name
pre-neck appendage
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,88
Protein sequence
MLKEITKLQTMDLNCSIFSVYDYNGMSMQEILCQFFSKINELIDSQNQVIDLTKWLVGQGLKEEVAKQLNQWLIDGTLSTIINETVFRDLNNKINSNIENIKNNKEEIDKLVTVWNNLKCFNVADFGAIGNGESNNNKAFEDAINSCVENNIRGLLIPSGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCRGSIITSDKNINIFTNGLYAENIGIFGNRRALSQNGIGQMDGGFGNWIEIEKVKIHGCGNNGINAEYGLITPIINQCWLYQNGNNGIRVGKNKGTYTGETNALIIEKCFINRNESHGIYLDVKGRAYTIKNNDLEQNGEMSDPLRNNKGTDYNDIVYGCYMKVEGEGGFTSGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGVKIGNNNMYGRHKVRVINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRSTGRVEKYSIENMIQSASYDGSTYTNVYLNKPSVPYELQEDGQGNKLIGTTFLTSDGTSIGLVVDFSWTNGLFKIRKDRTSLIKTGNAKFMENGGFTTINGGNTPVKIYVDHDNEIVIL
Physico‐chemical
properties
protein length:610 AA
molecular weight: 68746,58420 Da
isoelectric point:5,35721
aromaticity:0,10164
hydropathy:-0,48000

Domains

Domains [InterPro]
DC_1947
ATT
1–180
DC_1947 DC_0525
Coil
Unmapped
87–111
Coil IPR011050
IPR012334
STR
120–557
IPR012334
XGD05849.1
1 610
Architecture
ATT
STR
RBD
ATT 1-180 | STR 181-557 | RBD 558-610
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XGD05849.1
1 610
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,9891
Central domain 135 505 372 0,9850
C-terminal 506 610 104 0,9130
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-505
C-terminal
506-610

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CpP_VarHS
[NCBI] 		3455035 No lineage information
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGD05849.1 [NCBI]
Genbank nucleotide accession
PP973485 [NCBI]
CDS location
range 14957 -> 16789
strand +
CDS
ATGTTAAAAGAAATTACTAAACTTCAAACAATGGATTTAAACTGTAGCATATTTTCAGTTTATGATTATAATGGAATGAGTATGCAAGAAATTTTATGTCAATTCTTTAGTAAAATAAATGAATTAATTGACTCACAAAATCAAGTAATAGATTTAACAAAATGGTTAGTAGGTCAAGGTTTAAAAGAAGAAGTTGCAAAACAACTTAATCAATGGTTAATTGATGGTACTTTATCCACAATAATAAATGAAACAGTATTCAGAGATTTAAATAATAAAATTAACTCTAATATAGAAAATATTAAAAACAACAAAGAAGAAATAGATAAACTAGTAACAGTTTGGAATAATCTTAAATGTTTTAATGTTGCTGATTTTGGAGCAATCGGTAATGGAGAATCTAACAACAATAAAGCCTTTGAGGATGCCATAAATTCATGTGTTGAAAATAATATACGCGGTTTATTAATTCCAAGTGGAAAATTTTATATTACAGAGGGTATTAACACAAAGGGCGTAAAAATCATAGGAATGGGTGACCCCTATATTCCATTTTTAGAATGGGAATATACAAGACCAAACTCAAAATTAGATGAATATAAAAAATATTTAAATAAGTGTCGTGGTAGTATAATAACATCAGATAAAAATATTAATATATTTACTAATGGTCTATACGCTGAAAATATAGGTATTTTTGGTAATAGAAGAGCATTATCTCAAAATGGTATAGGCCAAATGGACGGAGGGTTTGGTAACTGGATTGAAATAGAAAAAGTTAAAATCCACGGTTGCGGTAATAATGGTATTAACGCTGAATATGGATTAATAACACCTATCATCAATCAATGTTGGTTGTATCAGAATGGTAATAATGGCATAAGAGTTGGTAAAAACAAGGGTACTTATACTGGTGAAACAAACGCTTTAATAATAGAAAAATGTTTTATTAATAGGAATGAAAGTCACGGTATTTACTTAGATGTTAAAGGTAGAGCTTATACTATTAAAAATAATGACTTAGAGCAAAATGGTGAAATGAGTGACCCATTGAGAAATAATAAAGGTACTGATTATAATGATATAGTTTATGGTTGTTATATGAAGGTTGAAGGTGAAGGTGGTTTCACTAGTGGGTCAATAGATTTTAGTAATAACTATTCAGAAGAAACTTTAGGTTTATTATACTTAGAAAGTCCCGATAATAAAATATGTCAAGGTGTAAAATTTGAATCTAATATGTGGCGACCTTATAATCAAGAATTATATTCAAATGGTTTACTACTAAAAGGTTGGATTGAAGGTGTTAAAATTGGTAATAATAATATGTACGGTAGACATAAAGTAAGAGTTATCAATGCAAATACTTATGGTATTGAAACTGACACAGATATAACAAACCCAGTATATAAAAACAAAAATATATCTATTGAAAAACATTATGACTATAACGGTACAATGGTTGACTTTAGAAGTACAGGAAGAGTTGAAAAATATTCTATTGAAAATATGATACAATCCGCATCTTATGACGGTAGCACATACACCAATGTATATTTAAATAAACCTAGCGTACCATATGAGTTGCAAGAAGACGGGCAAGGTAATAAATTAATTGGTACAACATTTTTAACATCAGACGGTACAAGTATAGGATTAGTTGTTGACTTCTCATGGACTAATGGATTATTTAAAATAAGAAAAGATAGAACATCATTAATAAAAACTGGTAACGCTAAGTTTATGGAGAATGGTGGTTTTACAACAATAAACGGAGGTAATACACCAGTAAAAATCTATGTTGACCATGACAATGAAATAGTAATTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8cb537f61eb0ea04574f332c3e111f3bdab3d9fe55ad2719bb212b69c286268e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6630
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50