Protein

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Genbank accession
YP_009126189.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MADLKANSTVGGAPIWHKGNFPLSPVGDTLLYKTFKVYTEFDKPQAVDNDFVSKATGGEYLKNVNFKEGLSFSDKDGASVFIGIPKNTTATATYTASIKLTGQFALETPDNKPFIIFDPNESFSPDVYRLTVMGDMLSRQIYDESGRVFSPGNTPSKAQVGLDLVDNAKQVQLEKSGVQTMTGVLAAPNFISTNPATADNHVARFDQIVIKDSIQDFGYYS
Physico‐chemical
properties
protein length:221 AA
molecular weight: 24058,69310 Da
isoelectric point:5,02755
aromaticity:0,10860
hydropathy:-0,28100

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009126189.1
1 221
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,6110
Central domain 200 210 12 0,0139
C-terminal 211 221 10 0,9475
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-210
C-terminal
211-221

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STP4-a
[NCBI] 		1445860 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009126189.1 [NCBI]
Genbank nucleotide accession
NC_026607 [NCBI]
CDS location
range 148172 -> 148837
strand +
CDS
ATGGCCGATTTAAAAGCAAATAGTACAGTAGGCGGAGCTCCGATATGGCATAAAGGAAATTTTCCTTTGTCTCCGGTAGGTGATACGCTACTTTATAAGACTTTCAAAGTCTATACAGAATTCGATAAACCTCAAGCAGTAGATAACGATTTTGTTTCTAAAGCCACTGGAGGAGAATATTTAAAAAACGTTAATTTTAAAGAAGGCTTATCATTTAGCGACAAAGATGGAGCTTCTGTTTTTATTGGTATTCCTAAAAATACTACAGCAACAGCTACTTATACCGCATCAATAAAATTAACCGGGCAATTCGCTTTAGAAACTCCTGATAATAAACCATTTATCATATTTGACCCAAACGAGTCATTTAGCCCTGATGTATATCGCTTAACTGTTATGGGTGATATGCTTTCTCGTCAAATTTATGATGAATCCGGAAGAGTTTTTTCTCCTGGGAATACTCCGTCAAAAGCGCAAGTTGGTTTAGATTTAGTCGATAACGCTAAGCAAGTTCAACTTGAAAAATCTGGTGTTCAAACAATGACCGGGGTTTTGGCTGCTCCAAACTTTATAAGTACCAATCCGGCAACGGCAGATAATCATGTAGCTCGTTTTGACCAGATTGTAATAAAAGACTCAATTCAAGATTTTGGATATTATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83e75f330abe45235d7ed0f8f9800bbbfa31b3a59b4a1306628fff7e0c00d880
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3446
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of STP4-a, a novel T4 virulent phage infecting Salmonella Li,M., Wang,J., Lin,H. and Han,F. 2015-11-13 — GenBank