Protein

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Genbank accession
QQO97058.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MKHAISIVLFFILSLGLNAQTVEGTVGSDGSLIPYNVSASADVQDGTITKAKLDASLAAEIDSKTNSSEVLNLHRTSDPTSNVKESNIINAWVKATLVDLESVSTDSYIGDLSLKATKNASGSGVVYSPNYSVEIGKEYVFSCRIKVGGGFITGSNLYLSDKSGAFTQTPIDHTITDWQLVTVTLGFTKTRTRVNFSMSAQPSGAFMLIDDMKLYENEETIKAFPNAYGFGSVSTGGRGGTVRKVTNLNDSGSGSLREAAGTANTYVVFDVAGNIELSSPISVADNVAIFGQTAFRNGGQGITLKANSTNESSLMTVSGKENFTVQYIRFRRGVTPFATAATGGQNLALANSANKAIIDHCSFGWDEDESLTIWDAQQVTVSNSIINHSLKVNAYGRVKTGKGVIIGNNAEEVSLYCNLIGNADQRNALFGGSTPPLGNFEFKNNLIHNWGTAGTYFTEGTNDFKVNIIGNKWKLGNNSILNRHALQATGNTGDLFYLEGNISAERPTDDLDEWLAIGNTTTPSVNLSTSFQQLTPFDYPLQDSPTYTIEELESTVIKQMGVSLYEDKPDYGAKQDYLNGTGSHINIPSDDGGYPVLSNFTTSILDSNSDGIEDSFATTHGITSPNQIIGSYDFGDWIFDNSIGYEAIEVYAYWLTKQ
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70805,52030 Da
isoelectric point:4,72385
aromaticity:0,09422
hydropathy:-0,22310

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
80–213
G3DSA:2.60.120.260 IPR012334
G3DSA:2.60.120.260
STR
80–200
G3DSA:2.60.120.260 IPR012334
IPR052063
Unmapped
216–655
IPR052063
IPR011050
STR
220–541
IPR011050
QQO97058.1
1 658
Architecture
STR
STR 80-541 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO97058.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 254 254 0,1715
Central domain 255 501 248 0,9157
C-terminal 502 658 156 0,6250
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-254
Central
255-501
C-terminal
502-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage Nekkels_1
[NCBI] 		2745692 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga sp. HaHa_2_1
[NCBI] 		2749994 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO97058.1 [NCBI]
Genbank nucleotide accession
MT732443 [NCBI]
CDS location
range 33026 -> 35002
strand +
CDS
ATGAAACACGCAATTAGTATAGTATTATTTTTTATCCTTTCGTTAGGATTAAACGCTCAAACGGTTGAGGGTACAGTAGGTAGTGACGGTAGTTTAATTCCTTATAATGTTTCTGCTAGTGCGGATGTACAAGACGGAACTATTACAAAGGCTAAATTAGATGCTAGTTTAGCGGCTGAAATTGATTCTAAAACAAACTCTAGTGAGGTTTTGAATTTACACAGAACATCAGACCCAACTAGTAATGTTAAAGAGTCTAACATTATTAATGCATGGGTTAAAGCCACTTTGGTTGATTTAGAATCAGTATCTACAGACAGCTATATTGGTGATTTATCATTAAAGGCAACTAAAAACGCTTCTGGTTCGGGTGTTGTGTATTCACCTAATTATTCTGTAGAAATAGGCAAGGAGTATGTTTTTAGCTGTAGAATTAAAGTAGGAGGTGGATTTATAACTGGTAGTAATTTGTACTTATCTGATAAGTCAGGAGCATTCACACAAACACCTATAGATCACACAATTACAGATTGGCAATTAGTAACGGTAACACTTGGATTCACCAAAACAAGAACCAGAGTTAATTTCTCAATGTCAGCACAACCATCGGGAGCTTTTATGCTTATTGATGATATGAAGCTTTACGAGAATGAAGAAACTATAAAGGCATTCCCTAACGCTTATGGTTTTGGCTCAGTATCTACAGGTGGAAGAGGCGGAACAGTTAGAAAGGTTACAAACTTAAACGATAGTGGTTCGGGAAGCTTAAGAGAAGCGGCAGGAACAGCTAATACATATGTGGTTTTTGATGTTGCTGGAAACATAGAGTTAAGTAGTCCTATTTCTGTAGCTGATAATGTGGCTATTTTCGGTCAAACAGCATTTAGGAATGGAGGGCAAGGAATAACATTAAAGGCAAATTCAACAAACGAATCTAGTTTAATGACCGTAAGCGGAAAGGAAAATTTTACAGTTCAATACATAAGATTCAGAAGGGGCGTTACTCCTTTTGCTACGGCTGCTACCGGAGGTCAAAACTTAGCTTTAGCTAATTCGGCAAACAAAGCGATAATTGATCATTGCTCTTTTGGTTGGGATGAAGATGAAAGTCTTACTATTTGGGATGCGCAACAAGTTACAGTTTCAAATTCAATAATTAACCACTCTTTAAAAGTAAATGCGTATGGACGTGTAAAGACAGGCAAGGGAGTTATTATTGGAAACAATGCGGAAGAAGTTTCATTGTATTGCAATCTAATAGGTAATGCAGACCAAAGAAACGCATTATTTGGAGGTTCTACACCACCACTAGGAAACTTTGAGTTTAAAAATAACTTAATACACAATTGGGGTACAGCCGGAACATATTTTACAGAAGGAACAAACGATTTCAAAGTTAATATTATTGGAAACAAATGGAAGCTTGGGAATAACTCAATACTAAATAGGCACGCTTTACAAGCTACAGGAAATACTGGAGATTTGTTTTATTTGGAAGGTAATATTTCAGCGGAAAGACCAACGGATGATTTAGACGAATGGTTAGCTATAGGCAACACAACAACGCCTTCTGTTAATTTATCTACTTCATTCCAACAATTAACACCTTTTGACTACCCTTTACAAGATTCTCCTACATACACAATAGAAGAATTGGAAAGTACAGTTATAAAACAAATGGGAGTTAGTTTGTATGAAGATAAACCAGACTATGGAGCTAAACAAGATTACTTAAACGGAACAGGTTCTCACATAAATATACCTAGTGATGATGGTGGTTATCCTGTTTTAAGTAACTTTACAACATCAATATTAGATTCTAATAGCGACGGTATAGAAGATAGTTTCGCAACTACTCATGGAATAACATCGCCAAATCAAATAATAGGCTCTTACGACTTCGGAGATTGGATATTTGACAACTCTATAGGTTATGAAGCTATAGAAGTTTACGCTTACTGGTTAACAAAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce65fbb30d112080eeedbd3a4ec48dad98fb208c455ea12da3d320b40f71b4e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7901
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank