Protein

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UniProt accession
A0A024B0V7 [UniProt]
Protein name
Polygalacturonase
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MIYVKDFSGITEAVKIQNAINAAAVATSSSKTVMLEEKDYYLESSLTLLNDVELLFGYRSRLVIGGNFPVLLIGRNASVTNPFIAIDAPTFDSPVFYLDGKNKYYNTWNKTSIKDGVVLNWTGSHKGVGIRFYSGGTDHEISFVDTSNIKLVGLRKGIELEAKAPATGMAWVNANRFDKISIEDCVEMITIDSSETIPNECSGNTFSNLQLQPSTATTKVLKVSGQHNRFDGMLWDISLIPTSKFVDITANSSFTKIDFNRSLPSTKVQDNGASTILL
Physico‐chemical
properties
protein length:278 AA
molecular weight: 30505,25570 Da
isoelectric point:5,68369
aromaticity:0,09353
hydropathy:-0,07230

Domains

Domains [InterPro]
IPR011050
STR
15–219
IPR011050
IPR011050
STR
15–230
IPR011050
DC_0399
RBD
213–278
DC_0399
A0A024B0V7
1 278
Architecture
STR
RBD
STR 15-230 | RBD 231-278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A024B0V7
1 278
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,8565
Central domain 13 267 256 0,9948
C-terminal 268 278 10 0,2542
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-267
C-terminal
268-278

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Hakuna
[NCBI] 		1486659 Uroviricota > Caudoviricetes > Herelleviridae > Wphvirus > Wphvirus hakuna
Host Bacillus thuringiensis
[NCBI] 		1428 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHZ10095.1 [NCBI]
Genbank nucleotide accession
KJ489399 [NCBI]
CDS location
range 32179 -> 33015
strand +
CDS
ATGATATATGTGAAGGATTTTAGTGGGATTACTGAGGCTGTTAAGATACAGAATGCCATCAATGCAGCAGCCGTAGCAACATCTTCATCAAAGACTGTCATGCTAGAAGAGAAAGATTATTACCTAGAGTCATCTCTTACTTTGTTAAATGATGTAGAGTTACTGTTTGGCTATCGTTCAAGATTAGTTATTGGCGGTAATTTCCCTGTACTACTAATAGGGCGCAACGCCTCTGTTACAAATCCATTCATAGCTATTGATGCTCCAACTTTCGATTCACCCGTATTTTACCTTGATGGTAAAAATAAATATTACAATACATGGAATAAGACATCTATAAAAGATGGTGTCGTTCTCAACTGGACAGGTTCTCATAAAGGTGTTGGTATCCGATTCTACTCTGGAGGAACTGACCATGAGATTTCATTCGTAGATACATCAAACATCAAACTAGTAGGTTTAAGAAAAGGTATTGAACTAGAAGCTAAAGCTCCAGCTACCGGAATGGCTTGGGTGAACGCAAATCGTTTCGATAAGATATCAATTGAAGACTGTGTAGAAATGATTACGATTGACAGCAGTGAGACAATCCCGAACGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCTACCGCAACAACAAAAGTTTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTTTGGGATATCTCTTTAATACCTACATCTAAGTTTGTAGATATTACAGCGAATAGCTCCTTTACAAAGATAGACTTTAACCGTTCCCTGCCTAGTACGAAAGTACAAGATAATGGAGCAAGTACAATTTTACTTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
27816f567b2a10865b3d996bcb6ce4ed0072757081c9476182ae80b4d9de9a94
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9179
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50