Protein

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Genbank accession
BAW98254.1 [GenBank]
Protein name
phage minor tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MEKVKLLQLDLRAENPDNYIDETQPVTVRTRDWYRPDYAPFYEKDFELYDGNGELLRKNKDYVFETLNDTLLKDTGKPVYLFFRILNTALNNKKSFRIKYRSVGNTGFPRSLIGKMTNELIHSEYWVDWETQVLGKPETLPAYQHWHDVANEVANWDQFIAFADMQLEMVVRGRKDHWVENETKIDRAERDFTLRHRAFWDMLDDHDQDYGNPHRLVRDDFELKHIPNYPLSNASEDLSGVNPVSFTTPRGLLNTVQQKRRISPGHVAAGRLSYTAPPRSVGVTREQNIETLTLGGVRKYMNGDMRYIVAAADDQAPTGIWLTDDDAELLQVTYDLAPVYPQVGGRDLPMDRTLRVIGKGYAVTHHSEDLSALFYPNPDSVLNRDQKDCVKLDMSKVNADIGAAWRTRSWFFSVGNHVLLLASVPNTNDAEYKLYAAKMTALSPTTTLVMNPMSVGVEDADGIVSNPVTTLPLIDVVKGGGGAYRTYHHSFVSDVTPTFTGHMTVLTGDDDLRKQNSFFIKIIKAMVVNGHTLPIEMSWSFSLDDNTLYRNLSGSNAKVYKTVIEIDSFDTVLADYVKRMNADYPDAHFGLTGTMHLNGNNGVIRRLPTGYDNLFDLYLSNIGRKVKGGIVEKRLIGLPAQVSSWHFGVLTDTDMVYMGKRVNIKRNIWDIRNHIVAGSTGSIYVHVGYVGGKLRSWVSDSDQGIGHSAIIAKADYTAAGITKVTLSEDN
Physico‐chemical
properties
protein length:730 AA
molecular weight: 82415,08200 Da
isoelectric point:6,07088
aromaticity:0,09863
hydropathy:-0,39411

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAW98254.1
1 730
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9537
Central domain 309 630 323 0,8899
C-terminal 631 730 99 0,5114
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-630
C-terminal
631-730

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pTD1
[NCBI] 		1938577 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus pTD1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAW98254.1 [NCBI]
Genbank nucleotide accession
AP017972 [NCBI]
CDS location
range 42538 -> 44730
strand -
CDS
ATGGAAAAGGTAAAACTGTTGCAGCTGGATTTACGAGCAGAAAATCCAGACAACTACATTGATGAGACACAGCCGGTTACCGTCCGTACTCGTGACTGGTATCGTCCTGATTACGCGCCTTTCTACGAGAAAGACTTTGAGCTTTATGATGGCAACGGTGAGTTGTTGCGTAAGAACAAAGACTACGTATTCGAAACATTAAACGATACGCTTTTAAAAGACACTGGTAAACCCGTTTACTTGTTCTTCCGTATTTTGAATACCGCACTCAACAACAAAAAGAGTTTTCGTATCAAGTACCGTAGTGTGGGGAACACGGGTTTCCCTCGTTCACTTATCGGTAAGATGACCAATGAACTCATCCACAGTGAATACTGGGTGGATTGGGAAACACAGGTCTTAGGAAAACCAGAAACGCTACCAGCGTACCAACACTGGCATGACGTAGCGAACGAAGTGGCTAACTGGGACCAGTTTATCGCGTTCGCTGACATGCAATTAGAGATGGTGGTCCGTGGTCGTAAAGATCACTGGGTGGAAAACGAAACCAAGATTGATCGTGCTGAACGTGACTTTACATTACGCCATCGTGCGTTCTGGGACATGTTGGATGACCACGATCAGGATTACGGTAACCCACACCGTTTAGTTCGTGATGATTTTGAACTCAAGCACATTCCTAACTATCCGTTGAGTAACGCTTCGGAAGACTTGAGTGGAGTGAACCCGGTTTCATTCACCACTCCTCGTGGGTTGTTGAATACCGTCCAACAAAAACGACGCATTAGTCCGGGGCACGTTGCGGCAGGTCGATTGAGTTACACTGCTCCTCCTCGAAGTGTTGGGGTGACTCGTGAACAAAACATCGAGACACTGACCTTAGGTGGGGTTCGCAAATACATGAACGGGGACATGCGTTACATCGTCGCGGCAGCGGACGACCAAGCTCCTACGGGGATTTGGTTAACTGATGACGACGCCGAACTCCTGCAAGTCACTTACGACTTGGCTCCGGTCTATCCTCAAGTAGGCGGACGAGATCTCCCTATGGACCGTACCCTTCGTGTTATTGGTAAAGGTTACGCGGTTACCCACCACTCAGAAGACTTGAGTGCGTTGTTCTACCCTAACCCGGATTCGGTCTTGAATCGAGATCAGAAAGATTGTGTTAAGTTAGACATGAGTAAGGTCAACGCGGACATTGGTGCAGCTTGGCGAACTCGCAGTTGGTTCTTCTCGGTTGGTAACCATGTCTTGTTACTGGCTTCAGTTCCGAATACCAACGATGCGGAATACAAACTGTATGCGGCTAAGATGACTGCACTTTCCCCAACGACGACGCTGGTTATGAACCCTATGTCGGTTGGTGTGGAAGACGCTGACGGGATTGTGAGTAACCCAGTAACGACCTTACCATTGATCGATGTGGTGAAAGGAGGCGGTGGTGCTTACCGAACGTATCATCACTCTTTTGTCAGTGATGTGACACCTACCTTTACGGGTCATATGACTGTCTTAACAGGGGACGATGATTTACGTAAACAAAACTCGTTCTTTATTAAGATCATTAAAGCAATGGTGGTGAACGGTCATACGTTACCGATAGAAATGTCGTGGTCTTTCAGTTTGGACGATAACACGCTGTATCGCAATCTAAGCGGTTCTAACGCTAAGGTGTACAAAACTGTAATCGAGATCGATTCGTTCGATACGGTGTTGGCTGATTACGTTAAACGTATGAATGCAGATTACCCTGACGCTCACTTCGGATTAACCGGGACCATGCACTTAAATGGCAACAATGGTGTTATCCGTCGCTTACCAACAGGTTATGATAATCTGTTCGATCTCTACCTAAGCAACATTGGCAGAAAGGTCAAAGGTGGGATTGTTGAGAAGCGTTTGATCGGCTTACCTGCTCAAGTATCTTCTTGGCACTTCGGGGTGTTGACGGACACTGACATGGTCTACATGGGTAAACGTGTTAACATCAAACGTAACATCTGGGATATACGCAATCACATCGTTGCCGGTTCAACAGGGTCAATCTACGTCCATGTTGGGTATGTTGGTGGTAAACTCCGCAGTTGGGTAAGTGACAGTGATCAGGGCATCGGTCACTCGGCTATCATTGCCAAAGCGGATTACACGGCAGCTGGTATCACCAAGGTTACATTAAGTGAGGACAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f88580985a6e19e711df78fe90a1b759134f99f5950504fda6e75c185b9683e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4394
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio Parahaemolyticus Bacteriophage pTD1 Midorikawa,Y. and Sano,M. 2017-07-13 — GenBank