Protein

View in Explore
Genbank accession
AVZ45661.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPRLIFKNNFEVALAQPTTTSDTTITIRSGSDFPTLGANESVVATIVDAATGLQFEIVTVTAVVGNVLTVQRAQEGTAARAWATGDLLSIRNTAATLTGVVRNYGKLPSGINLNFLTGSWFGNYFQDFNADAQPVLNYPVLQAGVLEVLKTGPSIESCVQRYSTYYNNVTYQRTYNAVNGVWSRWEQIYNSESVIPVANGGTGQTTIQGMKSAFGFGQVADQNIVPTSMGGTGSGDNAQAWLNIRPIGPTPLAGDPVNDYDAATKRWVENLVNTGTVGPSMNGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMLSPIADADWLADPAKRGKYSLGNGTTTFRVPDRNGVQAGSIPGLFGRGDGGVSSSDGRVRQNAAPNITGSIGTSISTQYNTAGNTGTGAIVPAPVVIPGLRVGPDGGATNLNYRNGLNIDASLSNGAYGRDGANEVRPNAFEGVWVIRASGGFVAANTSWSVINGDAVKPATGTLVRGGSVKSEYKIGTNIAYQAFLQAYGKIDGSSSECGAIVSNGVQEWSFNQYGALSFPDSITQIETQRSDGALTVNAYLRPKDLVAQPLNSVGVSAHERNAMRMVNFNQSTPGYVSYFSGDWYDGSYTFGGVRGGSTALERAQISINNGAGQAADFRFFPDGTASAGNWVSTSDERVKTNIQRISDPLGKMRLIKGVTWERLDKSEKPNGIGFIAQDVEGVFPDAVKTLKYSNTELKDGTIVEDIKSVDTYGVAAALHHEAILALMDQIDELKAEIAALKSAK
Physico‐chemical
properties
protein length:784 AA
molecular weight: 83450,85280 Da
isoelectric point:5,23330
aromaticity:0,08929
hydropathy:-0,22181

Domains

Domains [InterPro]
DC_0085
STR
1–784
DC_0085
cd19958
STR
105–189
cd19958 SSF88874 IPR030392 Coil
IPR030392
CHP
674–777
IPR030392
AVZ45661.1
1 784
Architecture
STR
STR 1-784
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM-Ro157lw
[NCBI] 		2144177 Uroviricota > Caudoviricetes > Lindbergviridae > Wifcevirus Ro157lw >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVZ45661.1 [NCBI]
Genbank nucleotide accession
MH051335 [NCBI]
CDS location
range 5479 -> 7833
strand -
CDS
ATGCCAAGGCTAATATTCAAAAACAACTTTGAGGTCGCGCTGGCTCAACCAACGACGACTTCAGACACCACAATCACAATTCGCTCAGGGTCGGACTTTCCGACCTTGGGCGCAAACGAGAGCGTAGTGGCGACAATCGTTGACGCTGCAACAGGCCTTCAATTCGAAATCGTCACAGTAACAGCCGTGGTTGGGAACGTCCTGACCGTGCAGCGTGCACAGGAAGGGACTGCAGCGCGTGCATGGGCGACTGGAGATCTGCTTTCCATTCGTAACACTGCTGCGACCTTAACAGGGGTTGTAAGAAATTATGGCAAACTTCCTTCTGGGATAAATCTCAACTTTCTGACAGGCTCTTGGTTTGGAAATTATTTCCAAGACTTCAATGCAGATGCTCAGCCTGTTCTTAATTACCCAGTTTTACAAGCAGGAGTCCTTGAAGTTCTAAAAACTGGACCATCAATAGAAAGTTGTGTACAAAGATACTCAACATACTACAACAATGTTACATACCAAAGGACTTACAACGCGGTAAATGGAGTTTGGAGTCGATGGGAGCAAATATACAACAGCGAATCTGTCATCCCAGTAGCCAACGGCGGCACAGGACAAACTACCATCCAAGGGATGAAGTCCGCTTTTGGATTCGGGCAAGTCGCTGATCAAAATATTGTTCCTACTTCGATGGGAGGCACAGGATCAGGTGATAACGCGCAGGCATGGCTGAATATCCGACCGATAGGCCCAACTCCGCTTGCTGGCGACCCTGTAAATGATTATGACGCCGCGACTAAACGTTGGGTTGAGAACTTAGTAAACACCGGAACTGTTGGCCCAAGCATGAACGGTGTTATGAACTATGGCGTCGGTGATTTCCACTTACGGGACAGCCGTGCTTATATTCAACCTTATGAAGTCGTTTCTGACGGACAATTGTTAAATCGTGCAGACTGGCCTGAACTTTGGGCTTATGCGCAAATGCTTTCCCCTATTGCCGATGCTGACTGGCTTGCCGACCCAGCAAAACGCGGCAAATATTCTTTGGGCAACGGAACAACAACATTCCGCGTACCAGACAGAAACGGTGTCCAAGCGGGGTCCATCCCAGGCTTATTTGGACGAGGCGATGGTGGAGTGTCTTCTTCTGACGGTCGCGTAAGACAAAACGCAGCGCCAAACATAACCGGTTCAATTGGTACTTCAATATCAACGCAATATAACACGGCAGGTAACACAGGGACAGGGGCAATAGTTCCAGCACCTGTTGTTATTCCAGGCCTAAGAGTTGGTCCAGACGGAGGTGCAACAAACCTTAACTATAGGAACGGATTGAACATTGATGCAAGCCTTTCCAATGGCGCTTATGGGCGTGATGGTGCAAATGAAGTTCGACCTAATGCCTTTGAAGGCGTTTGGGTGATTCGTGCATCGGGTGGATTTGTTGCCGCGAATACGTCTTGGAGCGTTATCAACGGCGACGCAGTAAAACCTGCAACCGGAACGCTTGTCAGAGGCGGTAGTGTAAAATCTGAATATAAGATTGGCACGAACATCGCGTATCAAGCATTCTTGCAGGCATACGGCAAGATTGATGGATCATCGTCTGAATGTGGAGCAATAGTTTCAAATGGTGTGCAAGAGTGGTCATTCAACCAATATGGAGCACTATCTTTCCCGGACTCAATAACGCAAATTGAGACTCAGAGAAGTGATGGCGCATTGACTGTTAATGCATATCTCAGACCAAAAGACCTTGTTGCGCAACCGTTGAACTCAGTAGGCGTTTCAGCGCATGAAAGAAATGCCATGAGGATGGTCAACTTCAATCAATCAACGCCTGGATATGTGTCATATTTTTCAGGAGATTGGTATGATGGCAGCTATACATTTGGCGGCGTTCGCGGCGGCAGCACAGCCTTAGAGCGTGCGCAAATATCAATCAACAACGGGGCAGGGCAAGCCGCTGACTTCAGATTTTTCCCTGATGGGACTGCCAGTGCTGGGAACTGGGTTAGCACGTCTGATGAGAGGGTCAAGACGAACATTCAAAGGATTTCAGACCCGTTAGGGAAGATGAGGTTGATCAAGGGTGTGACTTGGGAGCGTCTTGATAAATCAGAAAAACCGAATGGAATTGGCTTTATCGCCCAAGACGTAGAAGGCGTATTCCCTGATGCAGTAAAGACTTTGAAATATTCAAACACGGAACTAAAGGATGGCACAATTGTCGAGGATATCAAATCAGTCGACACTTACGGAGTGGCTGCGGCGCTGCACCACGAGGCTATTCTTGCATTGATGGATCAGATAGATGAACTCAAGGCAGAGATAGCCGCGCTAAAATCAGCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce1d0eb383782ee5c5f19832fb0f0e72d671216a1bdd9fd8378dba331e10b6db
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3203
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomics characterization of novel bacteriophages specific to non-O157 and O157 Shiga toxin-producing Escherichia coli (STEC) in non-fecal composts Liao,Y.-T., Sun,X., Quintela,I.A., Bridges,D.F., Liu,F., Zhang,Y., Salvador,A. and Wu,V.C.H. 2019-04-02 — GenBank