Protein

View in Explore
Genbank accession
ASU00187.1 [GenBank]
Protein name
subunit and tail pin
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSVQKPKELVDTGVRGQEGTGDTLHDGGLKLNQDINSIWNVFGDYRIGKTSGFGNRVQTLHGTGYYQKHTRAYYAGAEQPSGNPVEFGSMHDLSVIRDGTGDLTITLPQGSGHGGECIEFVNTDGSVGFGAGKEVIIRTSGSGDTIGASGNRLVVNRSNFKLTIWVAEASPAGSKWNYKLESIYGDSATSYSATITGIAVGADRNVVLFSKPQFNAVKHMIFVTQRGVGALQESCETLLMVNNTSTADTKVYSTEYARLRTKTPDKAEENLLFEASYSITGNSVLLTIKNISQSTIDVYIKSIDAIGA
Physico‐chemical
properties
protein length:308 AA
molecular weight: 33013,43670 Da
isoelectric point:6,08788
aromaticity:0,08117
hydropathy:-0,27500

Domains

Domains [InterPro]
IPR036240
STR
1–306
IPR036240
IPR008987
ATT
7–183
IPR008987 IPR027412
G3DSA:1.20.5.960
Unmapped
18–49
G3DSA:1.20.5.960 IPR027411
ASU00187.1
1 308
Architecture
ATT
STR
ATT 1-183 | STR 184-306 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASU00187.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,5362
Central domain 154 297 145 0,0029
C-terminal 298 308 10 0,9956
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-297
C-terminal
298-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AS-zj
[NCBI] 		2024208 Uroviricota > Caudoviricetes > Pantevenvirales > Emmerichvirinae > Ceceduovirus
Host Aeromonas salmonicida subsp. salmonicida
[NCBI] 		29491 Bacteria > Proteobacteria > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASU00187.1 [NCBI]
Genbank nucleotide accession
MF448340 [NCBI]
CDS location
range 194883 -> 195809
strand +
CDS
ATGTCTGTACAAAAGCCTAAAGAGCTAGTTGATACTGGCGTCCGTGGTCAAGAAGGAACCGGTGATACCCTTCATGACGGCGGCTTAAAATTAAACCAAGATATAAACAGTATTTGGAACGTGTTCGGGGACTACAGAATTGGTAAGACTTCTGGTTTTGGTAATCGCGTTCAGACCCTCCATGGTACTGGATATTATCAAAAACACACTCGGGCATACTATGCAGGGGCAGAACAGCCGTCTGGCAACCCAGTAGAATTTGGTTCTATGCACGACCTATCTGTTATCAGAGACGGTACAGGAGACCTTACTATAACTCTCCCTCAAGGTAGTGGTCATGGTGGGGAATGTATAGAATTCGTCAATACAGACGGTTCTGTGGGGTTTGGTGCGGGTAAAGAAGTGATTATTCGGACTAGTGGTTCTGGTGATACCATCGGGGCTAGTGGGAATAGATTGGTTGTAAACCGTTCCAATTTCAAATTAACCATATGGGTAGCAGAAGCAAGTCCAGCAGGTTCGAAATGGAATTATAAGCTTGAATCGATTTATGGCGACTCTGCAACTTCATATAGCGCCACTATTACTGGGATCGCAGTTGGTGCTGACCGAAACGTGGTTTTGTTTAGTAAGCCACAATTCAACGCGGTTAAACACATGATCTTTGTTACTCAACGTGGTGTTGGTGCCCTCCAAGAATCATGCGAAACTTTACTGATGGTAAATAATACCAGTACCGCAGATACCAAAGTTTATTCTACTGAATACGCTAGACTGCGAACCAAAACACCAGATAAAGCGGAAGAAAACCTTTTATTTGAAGCTTCTTATAGCATCACAGGTAATTCTGTTTTACTGACCATAAAAAACATTAGTCAGTCAACGATAGACGTATATATAAAATCTATCGATGCAATTGGGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1495b7bde4fec2142273a28ab925a03ee0a9c2a31d47216b6b680ae55fd857ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7247
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In vitro design and evaluation of phage cocktails against multidrug-resistant Aeromonas salmonicida Chen,L., Yuan,S. and Ma,Y. 2018-07-06 — GenBank