Protein

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Genbank accession
YP_008126341.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,77
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYIVDNRPGEVLYTNVPPIDANSNLDLTSPNNVLYKYNSIEGGIIVPRGCSLVGTDLRRTKIIPKYVPYPTTLPSKNINNEDQVPPRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSTETLPPKYSHHRLTCFEFADGLNPLSSLIAGGTVPNEDYSAVPNIQERTDLEIYYQKVSKAFATIPDTSGDPATDQIQARVEENRIVGPISDEYRVFQITRNGQTATAVTVDELGNERNHGFSVGVNINISGVTGSTGPQSELDASLYNGSFTVTSASGNVFTYQMSDEPTGNATGNSISVKTEIDTVDSASPYAFNLSLRSVWGMNGMHANGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDAAVSGDGAHLDGFAEYRKGWAHEHIKCSNDSFIQAVSVFAVGYGTHFTAESGADMSITNSNSNFGNTALRSAGFKAKSFSKDKAGEITHIIPPKALNVISTTATGTSGTNTITLANDGSINGIIQGMTITGDNIGSGAVVSTFNVNTRVVTLTVNNSGTVNGGVIFGEETSINWVNIDIQRTVDINAALVGQGGTAGTRLYLYGYTTEASPPTTRVQGYTVGARQDGTGVNAIPDKINCLLVPTTGAATSEVRTAKISPYGPSVSGLAAGASGAPIQFDSNTYTVNGVAGQVGGWYLSVDSNDNEIYTTLTTNTQYSSVNFTPTTFIKRIPDPRDLQDRTYRVRYVIDKDKTNPLPRDPLSGYVMQPLNSDTTAFALNRTFYIYDIEVVQEFERGISDGIYYLTLLCASIAPSTSNFNDRKFSQNVNEVYPTFDRDNPVADPVAAISVADNETIGLVYATDGAAPTPNKDPKRSITKESVVFLLTDTGWQQPSTTPAYDSVNSRLAGVELTARAGDEETRKISIRETNEGVVSPIPVELRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLSADQIKFSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIETFSELVLTDKLTVIGGASNQLESIFAGPVTFQGQVSSTNNIVAKKITYNNQDGTVIKQTLLAPEDANGQPSFANITGYDTPADGDLVYNINWEPGKSLGWIYYGGVWKEFGLTDVGFIDIADKDPLIPANNLTIDSDGTVGSGIGVGRNALNSYRVAVEGDVYIDGNLVGTGQGFVGSDKYITKTYTGDGSTLTFAISTYTGVQHTDDSCLVFLNGVAQIAGTNYTVDANGANIVFSAGDAPLSSDTIHILEMPI
Physico‐chemical
properties
protein length:1335 AA
molecular weight: 143495,16930 Da
isoelectric point:4,69447
aromaticity:0,09213
hydropathy:-0,24060

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008126341.1
1 1335
Domain Start End Length (AA) Confidence
N-terminal 1 88 88 0,9639
Central domain 89 312 225 0,9184
C-terminal 313 1335 1022 0,0625
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-88
Central
89-312
C-terminal
313-1335

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-IOM18
[NCBI] 		754039 Uroviricota > Caudoviricetes > Pantevenvirales > Tefnutvirus > Tefnutvirus siom18
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126341.1 [NCBI]
Genbank nucleotide accession
NC_021536.1 [NCBI]
CDS location
range 13806 -> 17813
strand +
CDS
ATGGCTCTTACTCGTCTTAAGAATATTATTACGTCCAGAACTGGACGTATCATTTACGTCAACCCTGATGATTTTGACGCTTCGGATGCCATTGACAACAGAGGAAACTCTGCTCTGAGACCATTTAAGTCTCTTCAAAGAGCATTTCTTGAAGTTGCTAGATTTTCGTATCGAGTAGGTCTGTCGAATGACGAATTCGACGCCTTCTCGATTATGCTGTATCCAGCAGAATATATTGTAGATAATAGACCTGGTGAGGTTCTTTATACTAATGTTCCTCCCATTGACGCTAACTCAAACTTAGATCTTACATCTCCAAATAACGTATTATATAAGTACAATTCCATTGAAGGTGGTATCATTGTTCCTAGAGGTTGTTCCCTCGTTGGCACTGACCTTCGTCGTACAAAAATTATTCCTAAGTACGTACCATATCCTACAACATTACCATCTAAAAACATTAACAATGAAGACCAAGTTCCTCCTAGAACTGCAATCTTTAAGGTAACTGGTGGTACATATTTCTGGCAGTTCTCCTTCTTTGATGGTGCTGAAGAAGGTGTATATTTCAAACCAGATAGCACAGAAACATTACCACCCAAGTATTCTCACCATAGACTTACTTGCTTTGAATTTGCAGATGGTCTTAATCCTCTGTCATCTCTTATCGCTGGTGGTACTGTTCCTAATGAAGATTACTCTGCAGTTCCTAACATTCAAGAACGAACTGACTTAGAAATTTATTATCAGAAAGTATCAAAAGCATTTGCAACTATTCCTGATACATCTGGCGATCCTGCAACTGACCAAATTCAGGCAAGAGTTGAAGAAAACAGAATCGTTGGTCCTATTTCTGACGAATATCGCGTCTTCCAAATTACTCGTAATGGACAAACTGCAACAGCAGTTACTGTTGATGAATTGGGTAATGAAAGAAATCACGGATTCTCTGTTGGTGTGAACATTAACATCAGTGGTGTTACTGGTTCTACTGGACCTCAATCAGAATTAGATGCATCATTGTATAATGGTTCGTTTACAGTTACATCTGCATCAGGTAACGTATTTACTTACCAGATGTCTGATGAACCAACAGGTAATGCGACTGGTAATAGTATTTCTGTTAAGACTGAGATTGATACCGTTGACTCTGCATCTCCTTATGCGTTCAACCTGTCACTGAGAAGTGTCTGGGGAATGAATGGTATGCACGCAAATGGTGCAAAGGCAACTGGTTTCAAATCGATGGTTGTTGCACAGTTCACTGGTCTATCACTGCAAAAAGATGATAGAGCGTTTGTAAGATATAATGCTTCTACTGGTAACTATGATGCAGCAGTTTCTGGCGATGGTGCTCACTTAGATGGTTTTGCTGAGTATCGTAAGGGTTGGGCACACGAACACATTAAGTGTAGTAATGACTCCTTCATTCAGGCAGTTTCGGTGTTCGCTGTTGGATACGGCACACACTTTACTGCTGAAAGTGGTGCTGACATGTCAATTACCAACTCTAACTCCAACTTTGGTAATACCGCACTTCGCTCTGCTGGTTTCAAAGCAAAATCTTTCTCCAAAGATAAAGCAGGTGAAATCACTCACATCATTCCACCTAAGGCGCTGAATGTTATTAGTACAACAGCAACTGGTACTTCTGGAACTAATACCATTACTCTTGCCAATGATGGTAGCATCAATGGTATTATTCAAGGTATGACAATTACGGGTGATAATATTGGAAGTGGTGCAGTAGTTTCAACCTTCAATGTTAATACTCGTGTAGTAACTCTGACTGTTAATAATAGTGGAACTGTCAATGGTGGAGTTATTTTTGGTGAAGAAACTTCTATCAACTGGGTAAACATTGATATTCAGCGTACAGTAGATATTAACGCTGCATTAGTTGGACAAGGCGGAACTGCTGGAACTAGATTATATCTTTATGGATATACAACTGAAGCATCACCTCCAACAACTAGAGTTCAGGGTTATACGGTTGGTGCTCGTCAAGATGGCACTGGTGTTAATGCTATTCCCGATAAGATTAACTGTTTGTTAGTTCCAACAACAGGTGCAGCAACATCTGAAGTCCGTACTGCTAAGATTTCACCTTACGGTCCTTCTGTTTCTGGTCTTGCTGCTGGTGCCTCTGGTGCTCCAATTCAATTCGACAGCAATACTTATACTGTTAATGGTGTTGCTGGTCAAGTTGGCGGTTGGTATTTAAGTGTAGATTCTAATGATAATGAAATCTATACAACCCTGACTACTAACACCCAATACAGTAGTGTAAACTTTACCCCCACAACATTTATCAAGAGGATTCCTGACCCCCGTGATTTGCAAGATAGAACCTATCGTGTACGCTATGTAATTGATAAGGATAAAACGAATCCCCTGCCTCGTGATCCCCTTTCGGGTTATGTAATGCAACCCCTGAACAGTGATACTACAGCATTTGCATTAAACAGAACCTTCTACATCTATGATATTGAAGTAGTTCAAGAATTTGAAAGAGGTATTTCAGATGGAATTTACTACCTTACACTCTTATGTGCATCTATTGCACCTTCAACTTCTAATTTCAATGACAGGAAGTTCTCTCAAAACGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTGTTGCTGACCCTGTTGCTGCGATATCCGTCGCTGACAATGAAACTATCGGTTTAGTATATGCTACCGATGGCGCAGCACCTACACCCAACAAAGATCCCAAACGTTCTATTACTAAAGAATCGGTAGTATTCCTTCTGACTGATACTGGTTGGCAACAACCAAGTACAACACCTGCTTATGATTCTGTCAATAGTAGACTTGCTGGTGTTGAACTTACCGCTCGTGCTGGTGATGAAGAAACCAGAAAGATTAGTATTCGTGAAACTAATGAAGGTGTAGTTTCTCCTATTCCAGTAGAACTTAGAAGACACTCTATTTTACGTTCTGGTAACCATACGTTTGAATATCTTGGTTTCGGTCCTGGTAACTATTCAACAGCGTTCCCTCAGACACAAGTAGAAACTTTATCTGCCGACCAGATTAAGTTCTCTCAGTCGATTAAAGAAGAAGCGGGTGTTGCTTTCTATTCTGGTCTTAACTCTAATGGTGACCTGTTTATTGGTAACCAGGTTATTAACCCTGTTACTGGTCAGATTACAAACGAAGATATTGCACAACTCAATGTTGTTGGTGAAGAGAATACAACGATTGAAACATTCTCTGAGTTGGTTCTTACTGATAAACTTACCGTTATCGGTGGTGCATCTAACCAGTTAGAATCTATTTTCGCTGGTCCTGTTACTTTCCAAGGTCAAGTATCTTCCACTAATAACATTGTTGCTAAGAAAATTACTTACAATAACCAAGATGGTACAGTAATTAAGCAAACTCTGCTTGCACCAGAAGATGCAAATGGGCAACCTTCTTTTGCTAATATCACTGGGTATGATACACCTGCTGATGGTGATTTAGTTTACAATATTAACTGGGAACCTGGTAAATCTCTTGGTTGGATTTATTATGGTGGGGTCTGGAAAGAATTTGGTCTAACTGATGTTGGATTCATTGATATTGCAGATAAAGATCCTCTTATTCCTGCTAACAATTTAACTATTGATTCTGATGGTACTGTAGGAAGTGGTATTGGTGTTGGTAGAAATGCTCTAAACTCTTACAGAGTTGCTGTAGAAGGGGATGTTTATATTGATGGCAACCTTGTTGGTACTGGTCAAGGTTTTGTTGGTTCTGATAAATACATCACCAAAACATACACTGGAGATGGTTCAACTCTAACATTTGCAATCAGTACCTATACTGGTGTTCAACATACAGATGATTCCTGTTTGGTATTCCTCAATGGTGTTGCACAAATTGCAGGCACTAATTATACAGTAGATGCTAATGGTGCAAACATTGTCTTTAGTGCTGGTGATGCTCCACTAAGTAGTGATACTATTCATATTTTGGAGATGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
333c3f485560ff6a5cba15865ff5cd5b3914ee3f25f9858edc104887be737ba8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank