Protein

View in Explore
Genbank accession
WWO60317.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSSTKIGLSGMFQVEVVRSCGKREVVLPWQKNLITDWGMDHMAGKHYQTNSSEFTNYVHVGTGSAVPAFADVKLQSWLGSASLINAVTVPPIPTDPEPFVGYRKVGTFARGAVVGNITELGVSTGQGKDSTLATRALFRDAEGQPVTIVVSSDEQLIITYEMRIYISKTPVVTTVTDPTTGVEYTIKALASNVAGAVYPGYLFSGTMGSSQNGINDVTSYAYHGPNAALGPINNQPLGTMVYGGCDYKTVVSSDGSWSTTTTITVRLGSFNDLDIKCFKVTESSPLYWAPIPWQFEFTPTWRKTADQTVQFDVRMEIARK
Physico‐chemical
properties
protein length:320 AA
molecular weight: 34714,89340 Da
isoelectric point:6,10135
aromaticity:0,10000
hydropathy:-0,09781

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60317.1
1 320
Domain Start End Length (AA) Confidence
N-terminal 1 303 303 0,2441
Central domain 304 309 7 0,0022
C-terminal 310 320 10 0,9854
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-303
Central
304-309
C-terminal
310-320

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SB4
[NCBI] 		3117473 No lineage information
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60317.1 [NCBI]
Genbank nucleotide accession
PP079415.1 [NCBI]
CDS location
range 37499 -> 38461
strand +
CDS
ATGAGTAGCACAAAGATCGGCTTGTCCGGTATGTTTCAGGTAGAGGTAGTCCGTTCCTGCGGTAAGCGAGAGGTGGTCCTCCCGTGGCAGAAGAACCTGATTACGGATTGGGGCATGGACCACATGGCAGGTAAGCACTACCAGACCAACTCCTCGGAGTTCACCAACTACGTCCACGTAGGCACCGGCTCCGCCGTACCTGCGTTCGCAGATGTTAAGCTCCAGTCGTGGCTTGGTTCAGCGAGCCTTATCAACGCCGTGACGGTGCCCCCGATTCCGACTGACCCGGAACCCTTCGTTGGATACCGCAAGGTTGGTACGTTCGCCCGAGGTGCAGTCGTAGGTAACATCACCGAGTTGGGTGTAAGCACGGGTCAGGGCAAGGACTCGACTCTGGCAACGCGCGCCCTGTTCCGCGACGCCGAGGGTCAGCCCGTCACCATCGTCGTATCATCTGACGAGCAGCTGATTATCACGTACGAGATGCGAATCTACATCTCCAAGACACCGGTAGTTACTACAGTCACCGACCCTACGACAGGCGTCGAGTACACCATCAAGGCACTGGCTTCTAACGTTGCGGGTGCAGTGTACCCCGGCTACCTGTTCTCTGGAACCATGGGGTCCAGTCAGAACGGGATCAACGATGTCACGTCGTATGCGTACCACGGACCCAATGCTGCGCTGGGCCCGATCAACAACCAGCCACTCGGCACAATGGTTTACGGTGGCTGCGACTATAAGACGGTCGTCAGCAGTGACGGGTCTTGGTCCACCACGACCACCATCACTGTGCGTCTCGGTTCGTTCAACGATCTGGATATCAAGTGCTTCAAGGTAACCGAGTCGAGTCCGTTGTACTGGGCGCCGATTCCGTGGCAGTTTGAGTTCACGCCGACGTGGCGTAAGACCGCAGATCAGACTGTGCAGTTCGACGTTCGCATGGAGATTGCCCGCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5905d90eb048f89f7568e00710bd5e1cb91626ba808c335cb5a8eee92a745df2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7237
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank