Protein

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Genbank accession
YP_009796570.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTTAIREARNRKRKPVTIDGQWTIAHPTKTALAVQGALIEGSKGASKPPAQYVPVEAPQSLRSKARGRILDLIAHGPIVGLVNGLQSILLDETPLQNPDGTFNFEGVVVQTREGYPDQAYIPGFTAVENSVEVNAEIKFATPIVRSVTNNDANAVIVTVAIQGLTEQKSNGDLLGYKLPYAVDVRQGLGAWTTSLVDTIDGKTTTTYQRSSRIPLNGPGPFDIRVRRTTEEAGANAKISDDLYWSIMTEVIDARLNYPDSALVAIDIDAELFGSKMPARYYDMELSIIKVPSNYNPRTREYTGFWDGTFKLAWSDNPAWCYYDLATHPVIGANNQAVDKWSLYRIAQYCDGMVPDGYGGMERRFSCNTLFASREEAITTLNTLASVWRGMVYWGAESVMAVGDMPGDVVKLVTPANITSDGFEYVGTSLRERHSVAVVMWNDPNDGYKQVPEMYEDPESIQLFGWRETQVTAACCTSRGQARRLAKWILYSERMETEIVSYTASTDHSDLRPGDFIKISDPDRAGVRLHGRIKQTGVRQLTLDKAPANLPNETWYLSCVMPSGTIQQREVLNFNGPVVTLKTDFPEEPIKSAVFILSSAAVVTPTYRVMSVIEQEDGVTYQISATEHNPNKYDFVEFDLQLPPTPDSTIPSGPLAGPETISVTTYKYITGGAEHQALNISWSSVDDVRVTGYILEVRDPDDVGYRTLFHGNSLTVDEKDVIDGEWLFRVKATTATGRTSEWVNLTANVAGLLFPAPPDTVTVETTTFEATVTPRNIYPNQMYEFWRSDVALAAGMIESNAKRLAVGTNLVDVGLKPDTTYYYYVRGTNIYGFSQFVGAQGKTKNDFDDILNALDTDIRKPGGLFDEMVNSVTPGIENAQQIAAAALAEAQAALAAAGGWIPRMEVVEDGITDLSLVDELQAVTLQALRTTVEGFQALVSTEEATRITEDAALASRITTVKAETDDQLAVVTDKTLVLASADQTLAQQITTLDTKYVTDIGENKSAIDDEKLLRTTADAALASRLSLVESAVGTDLVARITQEETTRASQTESLAQQITQLSATNGAQFASIAQTYSTVAYADTAVARAITTVTVNGKKAVFGISVDGEVAEIGAIADRFYVYNPVGGSYTLAFAVANGQTVIQDGMIRDASIGMAKITGALQSDNFIPGILGWRLSKTGLFENNGDTEGSGRMTQTNQAITVFDTAGNRKVQLGKLS
Physico‐chemical
properties
protein length:1217 AA
molecular weight: 132534,29170 Da
isoelectric point:4,76182
aromaticity:0,08053
hydropathy:-0,19178

Domains

Domains [InterPro]
DC_0014
STR
2–1217
DC_0014
IPR053171
Unmapped
39–906
IPR053171 IPR015406
IPR055385
ATT
127–253
IPR055385 IPR032876 IPR036116
IPR057587
ATT
756–853
IPR057587
YP_009796570.1
1 1217
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 2-126 | ATT 127-253 | STR 254-372 | ATT 373-527 | STR 528-755 | ATT 756-853 | STR 854-1217
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009796570.1
1 1217
Domain Start End Length (AA) Confidence
N-terminal 1 546 546 0,8977
Central domain 547 1161 616 0,0226
C-terminal 1162 1217 55 0,7798
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-546
Central
547-1161
C-terminal
1162-1217

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PMBT3
[NCBI] 		2059856 Uroviricota > Caudoviricetes > Maxrubnervirus >
Host Pseudomonas grimontii
[NCBI] 		129847 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009796570.1 [NCBI]
Genbank nucleotide accession
NC_047902 [NCBI]
CDS location
range 19046 -> 22699
strand +
CDS
ATGACTACCGCGATCAGGGAAGCTCGCAACCGCAAGCGAAAGCCAGTGACCATCGACGGTCAGTGGACTATCGCCCATCCAACCAAAACCGCACTGGCTGTGCAGGGGGCGTTGATTGAGGGCTCGAAGGGTGCCTCGAAACCTCCAGCGCAGTACGTGCCGGTGGAAGCGCCGCAGTCTCTGCGCAGTAAGGCGCGCGGCCGCATCCTTGACCTGATCGCCCACGGCCCTATCGTGGGGCTGGTCAACGGACTGCAGTCGATCCTGCTGGACGAGACGCCGCTGCAAAACCCCGACGGCACGTTCAACTTCGAGGGTGTGGTCGTCCAGACCCGTGAAGGCTACCCAGACCAGGCATACATCCCTGGTTTCACAGCCGTGGAGAACAGCGTCGAGGTCAACGCCGAGATCAAGTTCGCCACGCCGATCGTGCGCTCTGTCACAAACAACGACGCCAACGCGGTCATTGTGACAGTCGCCATCCAGGGCCTGACCGAGCAGAAGTCCAACGGTGACCTGCTGGGTTACAAGCTGCCCTACGCTGTGGACGTGCGCCAGGGCCTGGGTGCCTGGACAACCTCGTTGGTTGACACCATCGACGGTAAGACCACCACCACCTACCAGCGCTCGAGCCGCATCCCGCTGAATGGACCAGGCCCGTTCGACATCCGCGTGCGCCGAACCACTGAAGAGGCCGGCGCCAACGCCAAGATCAGTGACGACCTGTACTGGTCGATCATGACCGAGGTCATCGACGCCCGCCTGAACTACCCCGACAGCGCCCTGGTTGCCATCGACATCGACGCCGAGCTGTTTGGCTCAAAGATGCCGGCCCGCTATTACGACATGGAACTCAGCATCATCAAGGTGCCGAGCAACTACAACCCGCGCACCCGTGAGTACACCGGGTTCTGGGACGGCACGTTCAAGCTGGCGTGGTCGGACAACCCGGCCTGGTGCTATTACGACCTGGCCACGCACCCGGTCATCGGCGCCAACAACCAGGCTGTGGATAAGTGGTCGCTGTACCGGATCGCCCAGTATTGCGACGGCATGGTGCCGGACGGCTACGGCGGGATGGAACGCCGGTTCAGCTGCAACACGCTGTTCGCCAGCCGCGAGGAAGCGATCACCACCCTGAACACCCTGGCCAGTGTTTGGCGCGGGATGGTTTACTGGGGCGCCGAGTCGGTCATGGCCGTGGGCGACATGCCTGGCGACGTGGTCAAGCTGGTCACGCCGGCCAACATCACCTCCGACGGCTTCGAGTACGTGGGCACCTCGCTGCGCGAGCGTCACTCCGTCGCCGTGGTGATGTGGAACGACCCGAACGATGGCTACAAGCAAGTGCCGGAGATGTACGAAGACCCTGAGAGCATTCAGCTCTTCGGCTGGCGCGAGACCCAGGTCACGGCTGCGTGCTGCACCAGCCGTGGCCAGGCACGTCGCCTGGCCAAGTGGATCTTGTACTCGGAACGGATGGAGACGGAGATCGTTTCCTACACCGCGTCGACCGACCACAGCGACCTGCGCCCAGGTGACTTCATCAAGATTTCCGACCCAGACCGGGCCGGTGTACGGCTGCACGGCCGCATCAAGCAGACTGGCGTGCGTCAGCTGACCCTGGACAAGGCGCCAGCCAACCTGCCGAACGAGACCTGGTATCTCAGCTGCGTCATGCCGTCCGGCACGATCCAGCAGCGCGAGGTGCTGAACTTCAATGGCCCTGTGGTGACGCTGAAGACCGACTTCCCAGAGGAGCCGATCAAGTCAGCCGTGTTTATCCTGTCCAGCGCCGCCGTGGTCACGCCGACCTACCGCGTGATGTCGGTGATCGAGCAGGAAGACGGGGTGACCTACCAGATCTCCGCGACCGAGCACAACCCGAACAAGTACGACTTCGTCGAGTTCGACCTGCAGCTGCCGCCTACCCCGGACAGCACCATCCCGTCCGGCCCGCTGGCTGGCCCAGAGACGATCAGCGTCACGACCTACAAGTACATCACCGGCGGTGCCGAGCACCAGGCGCTGAACATCAGCTGGTCGAGCGTCGACGACGTCCGGGTCACCGGCTACATCCTCGAGGTGCGAGATCCCGACGACGTCGGCTATCGAACCTTGTTCCACGGCAACTCGCTAACGGTGGACGAGAAGGATGTCATCGACGGTGAGTGGCTGTTCAGGGTCAAGGCCACGACGGCTACTGGCCGGACGTCCGAGTGGGTGAACCTGACCGCCAACGTGGCAGGACTGCTGTTCCCAGCGCCTCCGGACACCGTGACCGTGGAAACCACCACGTTCGAGGCCACGGTCACGCCGCGCAACATTTACCCGAACCAGATGTATGAGTTCTGGCGCAGCGACGTGGCTCTGGCGGCGGGCATGATCGAGTCCAACGCCAAGCGTCTGGCCGTCGGCACCAACCTGGTGGACGTGGGGCTCAAGCCCGACACGACCTACTATTACTACGTGCGCGGCACCAACATCTATGGCTTCTCGCAGTTCGTTGGCGCGCAGGGCAAGACCAAGAACGACTTCGACGACATCCTCAACGCCCTGGACACCGACATCCGCAAGCCGGGTGGCCTGTTCGACGAGATGGTCAACTCGGTCACGCCTGGCATCGAGAACGCGCAGCAGATTGCAGCTGCCGCTCTGGCCGAGGCGCAGGCTGCGTTGGCTGCGGCGGGTGGCTGGATTCCGCGCATGGAAGTGGTCGAGGACGGCATCACTGACCTGTCCCTGGTCGATGAACTGCAGGCTGTGACGCTCCAGGCGCTGCGTACAACTGTCGAAGGCTTCCAGGCCTTGGTCAGCACCGAGGAAGCGACCCGGATCACCGAGGACGCGGCCCTGGCCAGCCGTATCACCACCGTCAAGGCCGAGACCGACGACCAGCTGGCCGTCGTGACCGACAAGACCTTGGTATTGGCGTCGGCTGACCAGACCCTGGCGCAGCAGATCACCACCCTGGACACCAAGTACGTCACCGACATCGGTGAGAACAAGTCGGCAATCGACGACGAGAAGCTGCTGCGCACCACAGCCGACGCTGCCCTGGCTAGCCGGTTGTCCCTGGTGGAAAGTGCCGTCGGCACCGACCTGGTGGCGCGCATCACGCAGGAAGAGACCACTCGAGCATCGCAAACTGAGTCGCTGGCGCAGCAGATCACCCAGCTGTCGGCCACCAACGGTGCCCAGTTCGCCAGCATCGCGCAGACCTACTCGACTGTGGCCTACGCCGACACCGCGGTGGCCCGCGCGATCACCACCGTGACCGTAAACGGCAAGAAGGCCGTGTTCGGTATCTCGGTAGATGGCGAGGTTGCTGAAATTGGTGCGATCGCAGACCGGTTCTACGTCTACAACCCAGTCGGTGGCAGCTACACGCTGGCATTCGCCGTGGCCAACGGGCAAACTGTGATCCAGGACGGTATGATCCGGGACGCATCCATCGGGATGGCCAAGATCACGGGGGCGCTGCAGTCGGACAACTTCATCCCAGGCATTTTGGGCTGGAGACTGTCTAAAACGGGCCTCTTCGAGAACAACGGTGACACTGAAGGCTCGGGCCGCATGACCCAGACCAACCAGGCGATCACGGTGTTCGACACAGCCGGCAATCGGAAGGTGCAGCTCGGGAAGCTCTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
26696655bc0a6c0a36e4aab9c3e087141ff62a30a4db39884e648e3ee9137043
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7499
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
First reported phage infecting Pseudomonas grimontii is genetically unrelated to other Pseudomonas phages Koberg,S., Brinks,E., Heller,K.J., Neve,H. and Franz,C.M.A.P. 2018-05-21 — GenBank