Protein

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Genbank accession
YP_009146196.1 [GenBank]
Protein name
amidase
RBP type
TSP
Evidence RBPdetect2
Probability 0,81
Protein sequence
MMVRPKKKAPTRKGPEPTQKTPARAHTFPAPIRGWILNENVSMPQPAGALTLDNWICTTTGIKPRGGVATHVTLEAPATALFSYRSGGAEVFFGATASKIYDISAASETTPPVVVSGQTGGAYSAQQFGTAGGDYLYAVNGADSAQLYDGSTWTQIDDVSTPAITGVTTASLSNVWAFANRLFFVEAGTQNAWYLGVDSIGGAANEFSLAGIFKKGGSLLFGATWSLDAGDGLDDKCIFVSTEGEVAVYEGTNPGSAADWRKVGVYQITRPLGPKAIMQAGGDLLIANENGLVPISAAIQRDTAALELAAVSRAITPHWQSQVSVTGGSAWEIVKWPQQNIMVISQPNDPDNTALIANLQTGAWSRQTGWDTQCLGFYDESVFFGDSEGRVSRMETGGSDNGVPYTCVYIGQHEGMGAPGVEKTVSQVRATFKVATKIAPYVSAKTDYDQTPSLAPSAPANDTELGVWDVALWDDAAWDAAGLPETRARWSSVGRTGRTVAPEVQMTFGNTAKPLVELVSIDAAYDIGALVT
Physico‐chemical
properties
protein length:532 AA
molecular weight: 56140,11730 Da
isoelectric point:4,80599
aromaticity:0,09023
hydropathy:-0,11504

Domains

Domains [InterPro]
DC_0395
STR
5–532
DC_0395
YP_009146196.1
1 532
Architecture
STR
STR 5-532
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009146196.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 400 400 0,7194
Central domain 401 521 122 0,0333
C-terminal 522 532 10 0,9901
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-400
Central
401-521
C-terminal
522-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Sulfitobacter phage NYA-2014a
[NCBI] 		1526550 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sulfitobacter sp. CB2047
[NCBI] 		1525218 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Sulfitobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009146196.1 [NCBI]
Genbank nucleotide accession
NC_027299 [NCBI]
CDS location
range 16877 -> 18475
strand -
CDS
ATGATGGTTCGCCCCAAGAAAAAGGCCCCCACACGAAAGGGGCCCGAGCCGACGCAGAAGACACCTGCCCGCGCGCATACGTTCCCCGCGCCCATTCGGGGCTGGATTCTGAACGAGAACGTGTCGATGCCGCAGCCTGCCGGCGCTTTGACGCTGGATAACTGGATCTGCACCACGACAGGCATCAAGCCCCGTGGCGGTGTCGCAACGCATGTGACCCTGGAGGCCCCCGCAACCGCGCTGTTTTCTTACCGCAGCGGCGGCGCAGAGGTGTTTTTCGGGGCTACTGCGTCCAAGATTTACGACATTTCGGCAGCATCCGAGACAACGCCCCCCGTGGTGGTGTCGGGCCAGACAGGCGGCGCGTACTCAGCGCAGCAATTCGGGACAGCGGGCGGGGATTACCTCTACGCGGTCAACGGGGCAGACAGCGCGCAGCTTTATGACGGCTCCACATGGACGCAGATTGACGATGTAAGCACGCCGGCAATCACAGGCGTTACCACGGCGTCACTGTCGAATGTGTGGGCCTTTGCCAACCGCCTGTTTTTCGTTGAGGCCGGCACGCAGAACGCTTGGTATCTCGGCGTCGACAGCATCGGCGGCGCGGCGAATGAGTTCTCCCTTGCCGGTATCTTCAAGAAGGGCGGTTCGCTCTTGTTCGGGGCCACATGGTCCTTGGATGCGGGCGACGGTCTGGACGATAAGTGCATTTTCGTCAGCACCGAAGGCGAGGTGGCCGTTTATGAGGGCACCAACCCTGGCAGCGCGGCAGATTGGCGCAAGGTCGGCGTCTACCAAATCACGCGCCCCTTGGGCCCGAAAGCCATCATGCAAGCGGGTGGTGACCTTCTGATCGCAAACGAAAACGGCCTCGTGCCTATCTCTGCGGCGATCCAGCGTGACACGGCGGCGCTGGAATTGGCAGCGGTGTCGCGGGCAATCACCCCACATTGGCAAAGCCAAGTCTCCGTGACAGGTGGCAGCGCATGGGAAATCGTCAAATGGCCGCAGCAAAACATCATGGTTATCTCGCAGCCGAATGACCCCGATAACACCGCGCTGATCGCCAACCTCCAGACGGGCGCTTGGTCGCGTCAAACCGGATGGGACACGCAATGCCTCGGGTTCTACGATGAAAGCGTGTTCTTCGGAGACTCCGAGGGCCGCGTGAGCCGCATGGAGACCGGCGGATCTGATAACGGCGTGCCATATACCTGCGTCTACATCGGGCAGCACGAGGGCATGGGCGCTCCAGGCGTTGAAAAGACCGTTTCGCAAGTGCGCGCGACGTTCAAGGTTGCGACCAAGATCGCGCCATATGTCTCAGCAAAGACCGACTACGACCAGACCCCAAGCCTTGCGCCTTCTGCGCCCGCGAATGACACCGAACTAGGCGTCTGGGATGTGGCTCTATGGGATGACGCTGCATGGGATGCCGCTGGATTGCCTGAGACGCGCGCGCGCTGGTCCTCTGTGGGCCGCACAGGCCGCACGGTTGCCCCCGAGGTGCAGATGACCTTCGGGAACACCGCAAAGCCGCTGGTTGAGCTTGTCTCGATCGACGCCGCCTATGACATTGGCGCGCTTGTCACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fe1d728d74c7077cc5a1296e8a03021e27df68deb37042f8615b710e87ca41c2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9177
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequene of the Sulfitobacter sp. 2047 prophage Ankrah,N.Y.D., Budinoff,C., Hadden,M., Lane,T. and Buchan,A. 2014-02-27 — GenBank