Protein

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Genbank accession
YP_009211931.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MPVTRYLCIFINVGLGEGSALPVGVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKVYPTNKLPDLRGEFIRGWDDGRGVDNGRGLLTLQDGAIVSHNHYWGIWTSRTNDQTLESFTGTTILKQIKPLSPAIDFDNYPIPNPAITEGGVVAATTKPAGANETRPRNVAFNYIVRAA
Physico‐chemical
properties
protein length:176 AA
molecular weight: 19037,32190 Da
isoelectric point:6,09765
aromaticity:0,09659
hydropathy:-0,20625

Domains

Domains [InterPro]
DC_0310
STR
5–176
DC_0310
SSF88874
STR
11–175
SSF88874
IPR051934
Unmapped
12–109
IPR051934
IPR037053
ATT
19–72
IPR037053
IPR011083
ATT
24–71
IPR011083
YP_009211931.1
1 176
Architecture
STR
ATT
STR
STR 5-18 | ATT 19-72 | STR 73-176
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage pro483
[NCBI] 		1649240 Uroviricota > Caudoviricetes > Peduoviridae > Peduovirus pro483 >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009211931.1 [NCBI]
Genbank nucleotide accession
NC_028943 [NCBI]
CDS location
range 21295 -> 21825
strand -
CDS
ATGCCAGTTACCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGGTTCGGCATTACCCGTCGGTGTGCCTGTTCCGTGGCCTTCAGCCACTCCGCCGACAGGCTGGCTGAAATGCAACGGGGCGGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGTTTACCCGACAAATAAATTGCCTGATTTACGCGGTGAGTTTATTCGTGGCTGGGATGATGGGCGTGGAGTGGATAACGGAAGGGGATTATTAACGCTTCAGGACGGTGCGATTGTCAGTCATAACCACTATTGGGGAATCTGGACTTCACGAACTAACGACCAGACTCTGGAAAGTTTTACAGGCACCACGATTTTAAAACAAATCAAGCCCCTGTCTCCGGCCATTGACTTCGATAATTACCCAATTCCCAACCCGGCTATTACAGAGGGTGGTGTTGTTGCGGCAACGACTAAACCTGCAGGTGCGAATGAAACACGCCCACGAAATGTCGCTTTTAACTATATTGTGAGGGCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
560c2912ec3cfebe24b7b1b9a0cb7ea06f260f21978714767216fe7f3381ea01
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7278
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequencing of two novel prophages of avian pathogenic Escherichia coli (APEC) Chen,M. and Zhang,W. 2021-08 — GenBank