Protein

View in Explore
Genbank accession
WAX24423.1 [GenBank]
Protein name
tail fiber domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MGGTSKSETTQSSTTAPWQPTQGLLSNIIGQLNSATGNTGLTGAQNNALGTIENNSNAISAQFGPQASNYAQSLFNGGGALNQAGNINQNYQNYVNATQPLASNTNYNPYSTPGFSDAVNTLTNDITNNVNGQFAASGRDMSGANSQALARGIAQGVAPLIQQQYNQNVANQQNAANALYGAGNTNSGLLAGLQQQYLTNQGNGVAAASSAGDLQNAGATNTLAAEAQKYGIPLQNLGLLSQIGIPIAGLGSQSSGQSTTTNQMSGAQQFGTIAGGLGSLFGGGGGSTVGNIFKLISDRNAKEDIAQVGTLFDGTPVYRYRYKGQPAFQIGLMAQDVEKTTPEAVGRIGAYKAVDYKLATDKALEVA
Physico‐chemical
properties
protein length:367 AA
molecular weight: 37537,58450 Da
isoelectric point:5,12741
aromaticity:0,06540
hydropathy:-0,34741

Domains

Domains [InterPro]
DC_0745
STR
1–365
DC_0745
IPR030392
CHP
297–345
IPR030392
WAX24423.1
1 367
Architecture
STR
STR 1-365 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBeUSDA76-2
[NCBI] 		3003364 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bradyrhizobium elkanii USDA 76
[NCBI] 		398525 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Nitrobacteraceae > Bradyrhizobium > Bradyrhizobium elkanii USDA 76

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24423.1 [NCBI]
Genbank nucleotide accession
OP596614.1 [NCBI]
CDS location
range 29407 -> 30510
strand +
CDS
ATGGGCGGCACGTCGAAATCCGAAACCACGCAGAGCTCCACAACGGCGCCATGGCAGCCGACGCAGGGCTTGCTGAGCAATATCATTGGACAGCTCAATAGCGCGACCGGCAACACCGGACTTACGGGTGCTCAGAATAATGCGCTTGGGACGATCGAGAACAACTCCAATGCGATCTCGGCGCAGTTCGGCCCTCAAGCGTCGAACTATGCTCAATCGCTCTTCAATGGCGGTGGCGCGCTTAATCAAGCCGGCAACATCAATCAAAATTATCAGAACTACGTGAATGCGACGCAGCCGCTTGCCTCCAACACAAATTACAATCCTTATTCGACGCCGGGATTTAGTGATGCCGTCAACACGTTGACGAACGATATCACAAACAATGTGAATGGGCAGTTTGCGGCGTCAGGCCGAGATATGTCCGGCGCAAACTCGCAGGCGCTTGCTCGTGGCATCGCTCAAGGCGTGGCGCCACTCATTCAGCAGCAATACAATCAGAACGTAGCCAACCAGCAGAATGCTGCGAATGCGCTCTACGGTGCAGGGAATACGAACTCTGGTCTGCTGGCCGGTCTGCAACAGCAGTACCTGACGAACCAAGGCAATGGAGTGGCTGCGGCTTCGAGTGCTGGCGATCTTCAGAACGCCGGGGCTACCAATACACTAGCCGCCGAAGCCCAAAAGTACGGCATTCCGCTTCAAAATCTCGGCCTTCTATCGCAGATCGGTATCCCGATTGCGGGCCTAGGGTCTCAGTCGAGCGGACAAAGCACCACGACGAACCAGATGTCAGGCGCCCAGCAGTTCGGAACGATTGCTGGCGGCTTGGGCTCGTTGTTCGGTGGAGGTGGCGGTTCGACGGTTGGGAACATCTTCAAACTGATCTCGGACCGCAATGCCAAAGAAGACATTGCCCAGGTCGGCACGCTGTTCGACGGAACGCCAGTCTATCGCTATCGATACAAGGGGCAGCCGGCATTCCAGATCGGGCTCATGGCGCAGGATGTCGAGAAGACGACGCCTGAGGCTGTCGGACGCATCGGTGCGTACAAGGCCGTCGATTATAAACTCGCAACAGACAAGGCTCTGGAGGTCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d444aea407eb36c83d3fe8fce4aa69fde287a465f88e42d8bd1f7a93f20dbd33
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8229
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank