Protein

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UniProt accession
A0A8S5RBW4 [UniProt]
Protein name
Pulmonary surfactant-associated protein D, c-type lectin, alpha-helical coiled
RBP type
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
PHGERGEAGAQGPKGEKGCPGAKGDKGDKGDEGRQGPKGDQGPVGAQGPVGPQGPVGPKGADGKDVDPELLKRILGELETLKAEVDYLKKAHHASEVLVDGTGAVTLSYAHTTEAM
Physico‐chemical
properties
protein length:116 AA
molecular weight: 11714,83570 Da
isoelectric point:5,53415
aromaticity:0,01724
hydropathy:-0,84224

Domains

Domains [InterPro]
DC_0791
STR
1–116
DC_0791
IPR050149
Unmapped
3–64
IPR050149 Coil
IPR008160
STR
6–63
IPR008160
A0A8S5RBW4
1 116
Architecture
STR
STR 1-116
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage virus sp. ctOZh10
[NCBI] 		2828250 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE28557.1 [NCBI]
Genbank nucleotide accession
BK059088 [NCBI]
CDS location
range 19051 -> 19402
strand -
CDS
CCCACATGGCGAACGCGGTGAAGCTGGTGCTCAAGGTCCTAAAGGTGAGAAAGGTTGCCCAGGTGCTAAAGGTGACAAAGGTGATAAAGGGGATGAAGGTCGTCAAGGTCCTAAAGGGGATCAAGGCCCAGTAGGTGCTCAAGGTCCGGTTGGCCCACAAGGTCCAGTAGGTCCTAAAGGTGCTGATGGTAAAGACGTAGATCCAGAATTACTCAAACGCATCTTAGGTGAATTGGAAACCTTAAAAGCCGAAGTTGACTACCTCAAAAAAGCTCATCACGCAAGTGAAGTTCTTGTTGATGGTACTGGCGCAGTAACCTTATCTTACGCTCACACCACTGAAGCAATGTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)
GO:0030020 extracellular matrix structural constituent conferring tensile strength Molecular Function IEA:TreeGrafter (UniProt)
GO:0030198 extracellular matrix organization Biological Process IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
8912b9dad06b71a2963ff7fd0befb99e0d66fb66d3b1839b5e866a8621265453
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5967
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50