Protein

View in Explore
Genbank accession
APD20116.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTKPNFPLGLESQEQSIFQEGLLNNGVMEHGPDAVMTVPETIDASGIPSAIRYNATDDQFEGYYADGGWMAMGGGGSGRWVLLPHADTTTLQLGRAYLVDNSPGASTVVFPSPKRVGDSITLTDLKGKFSTYPLSVDGGGNAIYGSVEPMTISTDNVSATFTWTGDGRGWVITAGVGLGQGRVYSREIYSQILSAETVSITLSTQPSIVDVYVNGKRLKESLYTLNGYDVQFDPHLVEGDDVQIIQYIPIQLGNGGNGGGGGTVITWIYNGGAANGGETEITLDIVVDSVSEIYIRGSRQQIGLGFEFDPATSKITLADALEQGDDVVVVINGDPTVYNQIDRTPWEVARANNVSNAEVILSTDKQTALDDKTVLYDVATQTSWGIPEGLPTGVKITSVSPSGVLVYSPGTASVQMEKLGAAVLKADLATSTPLFSGAMLVKTIRGLTVQQELDRGRIVFPELFSIGLTNPTDDDLWDAMFSTLTSMSTGLSTELPYTIDLRGKEYTLTRSHKLDMNVNICNGTIWMSYGGQIILGEESTTGKTRRYLLKELKVRYTGTKYYPDALLKIARCFNSQIFCCDFWAGDSTAVDPDNSSVWQRARYGLWLGSKRAWGCGVFGGDFYGGDIPCRIGFTNDHTGLTVTGGATFHHGRVGNLLCCNPSGAFIGGINIEHSENGAWGLCVTSSTNGGSNPAHGVEIVGIYFYNNANGTTGTVYAPAGILIGYDAPGTMDFDVAGQEITSLNTAHTITVRNCNPISPKQLRAVKMRGLFGLKVMENKYTMADGELYGITIEGTAARSRVEDNRNQSSGLADEVEYTSTNKPTVGNKAGTFLPSLSASVSSGSLTYSTRGGDYSISNGMCLLSMWLTVGSITTQPDGDLTVSLPVSISSGRRAGCGVQAINISGTTSQTINSVGALDSDANATLKATGTVVINNNTLPVTAYILSGSTLVLRIGNQSLKGNMLMANTALMLSIAYPVDGAVYTGS
Physico‐chemical
properties
protein length:990 AA
molecular weight: 105061,74150 Da
isoelectric point:4,84083
aromaticity:0,07879
hydropathy:-0,08253

Domains

Domains [InterPro]
DC_1946
ATT
1–774
DC_1946
G3DSA:3.30.2020.50
ATT
343–427
G3DSA:3.30.2020.50 DC_1378
APD20116.1
1 990
Architecture
ATT
RBD
ATT 1-774 | RBD 775-981 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD20116.1
1 990
Domain Start End Length (AA) Confidence
N-terminal 1 476 476 0,9973
Central domain 477 834 359 0,9916
C-terminal 835 990 155 0,9947
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-476
Central
477-834
C-terminal
835-990

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_Sru_IME250
[NCBI] 		1852640 Uroviricota > Caudoviricetes > Pantevenvirales > Taipeivirus > Taipeivirus IME250
Host Serratia rubidaea
[NCBI] 		61652 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD20116.1 [NCBI]
Genbank nucleotide accession
KY073123 [NCBI]
CDS location
range 74686 -> 77658
strand +
CDS
ATGGCCAATAAACCTACGAAACCGAATTTCCCGCTGGGGCTTGAGTCCCAGGAACAATCAATTTTCCAAGAAGGACTGTTGAACAATGGAGTTATGGAACATGGCCCAGATGCGGTCATGACTGTTCCAGAGACTATTGATGCTTCAGGAATCCCTTCGGCTATTCGTTATAACGCGACTGATGACCAATTTGAAGGTTATTATGCCGATGGTGGTTGGATGGCCATGGGAGGCGGTGGAAGTGGCCGCTGGGTACTCCTTCCGCATGCCGATACGACTACTTTACAACTTGGTCGTGCCTATCTGGTTGACAACAGCCCCGGTGCCTCTACGGTGGTGTTCCCTTCCCCTAAACGGGTTGGTGATAGCATTACCCTGACCGACCTCAAAGGTAAATTTTCAACGTATCCGTTATCAGTTGACGGTGGCGGAAATGCCATTTATGGTTCAGTTGAACCGATGACAATATCCACTGATAACGTCAGTGCGACGTTCACATGGACGGGTGATGGTCGTGGTTGGGTTATTACTGCAGGCGTTGGCCTGGGGCAAGGCCGCGTGTACAGCCGAGAGATTTACAGCCAAATCCTTTCAGCTGAAACAGTTTCTATTACGTTGTCTACTCAACCGTCCATCGTTGATGTTTATGTCAACGGAAAGCGTTTAAAAGAATCCTTGTACACCCTGAATGGTTATGACGTCCAATTCGACCCTCATTTGGTTGAAGGGGATGACGTTCAAATTATCCAATACATCCCTATTCAATTGGGTAATGGCGGCAACGGTGGCGGCGGTGGAACTGTCATCACGTGGATTTATAATGGTGGTGCGGCTAACGGCGGAGAGACTGAGATTACTCTGGACATCGTTGTAGACTCAGTGTCTGAAATCTACATCCGGGGTTCCCGTCAGCAGATTGGCCTTGGATTCGAGTTTGATCCAGCAACAAGCAAAATTACTTTGGCTGATGCTCTGGAACAAGGTGATGATGTTGTCGTGGTCATCAACGGTGACCCAACAGTCTATAACCAGATTGACCGTACTCCTTGGGAAGTTGCCCGCGCAAATAATGTAAGCAATGCCGAAGTTATTCTCAGTACCGACAAGCAAACTGCGTTGGATGACAAAACAGTTCTTTACGATGTGGCAACACAGACTAGTTGGGGGATTCCCGAAGGGTTGCCGACTGGTGTTAAGATAACGAGCGTTAGTCCTTCTGGCGTTTTAGTTTATTCTCCTGGCACCGCAAGTGTACAGATGGAAAAATTAGGCGCTGCCGTTCTTAAAGCAGATTTAGCAACGAGCACCCCTTTGTTTTCAGGTGCTATGCTTGTTAAAACTATTCGTGGTTTAACTGTACAACAAGAATTAGATAGGGGACGTATTGTTTTCCCCGAATTATTTTCTATAGGACTCACCAATCCTACCGATGACGATCTTTGGGATGCGATGTTTTCAACATTGACTTCTATGAGTACTGGATTGTCTACAGAATTACCGTACACCATAGATCTTCGGGGGAAAGAATATACTTTAACCCGTTCACATAAATTAGATATGAACGTGAACATTTGTAACGGTACTATATGGATGTCGTATGGTGGGCAAATAATTCTTGGAGAAGAATCAACAACAGGTAAAACTCGCCGTTATTTGTTAAAAGAATTGAAAGTTAGGTATACTGGCACAAAATATTATCCGGACGCGTTGTTAAAAATAGCACGTTGTTTCAACTCGCAAATATTTTGCTGTGATTTTTGGGCTGGTGATAGCACTGCTGTTGACCCTGATAACAGTAGTGTTTGGCAACGCGCTCGATATGGTTTATGGCTGGGTTCTAAACGTGCTTGGGGTTGTGGGGTTTTTGGTGGTGATTTCTATGGTGGTGATATTCCTTGTCGTATCGGGTTTACGAATGACCACACAGGTTTGACCGTGACGGGTGGCGCCACATTCCATCATGGCCGCGTCGGTAATTTATTGTGCTGTAACCCTTCTGGTGCATTCATAGGCGGCATCAATATAGAGCATTCAGAGAATGGAGCTTGGGGATTATGTGTGACCTCCAGCACTAATGGAGGCTCAAATCCAGCACATGGTGTAGAAATCGTGGGTATTTATTTTTACAACAATGCCAACGGGACTACAGGAACTGTGTATGCGCCAGCGGGTATTTTAATTGGTTATGATGCCCCAGGTACTATGGATTTTGACGTTGCAGGGCAAGAAATAACCAGTTTGAACACAGCACACACCATAACTGTCAGGAACTGTAACCCAATATCACCAAAACAATTGCGAGCAGTTAAAATGCGTGGATTGTTCGGGTTAAAAGTTATGGAAAACAAATATACTATGGCTGACGGAGAATTATATGGTATCACTATAGAAGGAACCGCAGCCCGGTCTAGGGTTGAAGATAACAGGAACCAATCTTCTGGTTTGGCGGATGAAGTAGAATATACTTCTACCAATAAGCCAACTGTTGGTAATAAGGCCGGGACATTTTTACCATCTTTGAGTGCATCTGTATCTTCTGGTAGTTTGACATATTCAACCAGAGGCGGAGATTATTCTATATCTAATGGGATGTGTTTGTTATCAATGTGGTTGACTGTTGGTTCTATAACGACGCAACCTGATGGGGATCTTACTGTTAGTTTACCTGTGAGTATATCTTCAGGCAGGAGAGCAGGTTGTGGTGTCCAAGCAATTAATATCAGCGGAACGACTTCCCAAACTATCAATAGCGTGGGCGCACTTGATAGTGATGCTAATGCGACGTTGAAGGCAACCGGAACTGTTGTTATCAACAACAATACATTACCAGTTACGGCTTATATTTTGAGTGGCTCCACGTTAGTGTTAAGGATCGGCAACCAATCATTGAAAGGTAATATGCTGATGGCTAACACTGCTTTAATGCTTTCTATCGCGTATCCGGTAGATGGCGCTGTATACACTGGTTCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5c9ee9b8ce058b9c6b2f17ecc04c586638fbc17b853b960b4e2528e5b63a9702
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7112
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of the first virulent bacteriophage infecting the opportunist pathogen Serratia rubidaea Xing,S., Ma,T., Zhang,X., Huang,Y., Mi,Z., Sun,Q., An,X., Fan,H., Wu,S., Lin,W. and Tong,Y. 2017-03-06 — GenBank