Protein

View in Explore
Genbank accession
XPP57884.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,75
Protein sequence
MWADKGDLMKYTQNYKLNKPDSTDKFDIDHFNSNFDKIDSEMKNAANGLNYVKKAITSNPDGTGAIDLTIGTRDGEKGDLSVAIGEKVMATGKGAIAAGVGSNASGAFSHAEGTFYVERLRESLKITDVEQNAVVIASIKGIENGEVDLEEWLSESKVYIVSQNVNYDDPESILSTTKKIEVDRYVTASEGYRFKADKESHSLKAGDKVYLIRLFETKSIGNYSHAEGMGTCSDGEASHAEGIHTSAIGNAAHSSGLKSIASASGGFAHGSGVIADNGYSVAFGVYNAHMKGGATPYQGRGTAFVIGNGLEDSRSNALSLSYDGVLKTASTMTASTSADYAEYFEWKDGNSENEDRVGYFVTLDGNMIRKATDQDDYVLGVVSGSPCILGNGDCDVWNGRLIRDDFRRVIMEEDSDGGHAKINPEYDNTRNYKNRADRPEWSAVGMLGILPVRQDGTLKVNGYATVNLDGMATECDRSVKNAYRVINIKSAEVAEIIFR
Physico‐chemical
properties
protein length:499 AA
molecular weight: 53929,99970 Da
isoelectric point:5,01072
aromaticity:0,08216
hydropathy:-0,45491

Domains

Domains [InterPro]
DC_1296
ATT
8–97
DC_1296 IPR011049 G3DSA:2.40.300.10
IPR011049
STR
35–136
IPR011049 DC_2095 G3DSA:4.10.80.40
IPR011049
STR
55–115
IPR011049 IPR011049 G3DSA:4.10.80.40
IPR021865
CHP
320–490
IPR021865
XPP57884.1
1 499
Architecture
ATT
STR
STR
RBD
ATT 8-97 | STR 98-136 | STR 200-385 | RBD 386-490 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP57884.1
1 499
Domain Start End Length (AA) Confidence
N-terminal 1 64 64 0,8969
Central domain 65 284 221 0,8874
C-terminal 285 499 214 0,9281
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-64
Central
65-284
C-terminal
285-499

Taxonomy

  Name Taxonomy ID Lineage
Phage Lachnospiraceae phage IMGVR 15430980
[NCBI] 		3403684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lachnospiraceae
[NCBI] 		186803 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Lachnospirales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP57884.1 [NCBI]
Genbank nucleotide accession
PV036455 [NCBI]
CDS location
range 45647 -> 47146
strand +
CDS
ATGTGGGCAGATAAGGGAGATCTGATGAAATACACACAAAACTATAAGCTAAATAAGCCAGACAGTACTGATAAGTTTGATATTGATCATTTCAACTCGAACTTTGACAAGATAGATTCGGAAATGAAGAATGCAGCAAACGGACTGAATTATGTTAAAAAGGCGATCACTTCAAATCCGGACGGGACGGGGGCCATTGATCTCACGATAGGAACCAGGGATGGGGAGAAGGGCGATTTGTCTGTAGCCATAGGCGAAAAAGTAATGGCCACAGGAAAAGGCGCTATTGCAGCCGGGGTTGGAAGTAATGCAAGCGGTGCATTCAGTCATGCTGAAGGAACATTTTATGTGGAAAGACTTAGGGAAAGCCTAAAGATAACAGACGTTGAACAGAACGCCGTTGTTATTGCTTCTATAAAGGGTATAGAGAATGGAGAGGTAGATCTTGAAGAGTGGCTTTCGGAATCAAAGGTTTATATTGTTTCGCAGAATGTGAATTACGACGATCCTGAAAGTATCTTAAGCACTACTAAGAAAATAGAAGTTGATAGATATGTAACGGCATCAGAAGGATATCGCTTCAAAGCTGATAAAGAAAGTCATTCGTTAAAAGCCGGAGACAAGGTGTATCTTATTAGGCTTTTTGAAACAAAGAGCATAGGAAATTATTCTCATGCAGAAGGTATGGGAACCTGTTCTGATGGTGAGGCATCACATGCAGAGGGAATACACACGTCAGCAATTGGAAACGCAGCACACAGCAGTGGTCTTAAGAGTATTGCATCCGCTAGTGGAGGATTTGCGCATGGATCTGGAGTGATAGCGGATAATGGTTATTCGGTAGCCTTTGGTGTATATAATGCGCACATGAAGGGAGGGGCTACGCCCTATCAGGGAAGAGGAACAGCTTTTGTAATAGGAAATGGACTGGAAGATTCACGTTCAAATGCGCTTTCACTGAGCTACGATGGAGTACTGAAAACAGCTTCAACTATGACAGCATCTACTTCGGCGGATTATGCTGAGTATTTCGAATGGAAAGATGGTAATTCAGAAAACGAGGATAGAGTCGGATATTTTGTAACGCTTGATGGAAATATGATAAGGAAAGCTACAGATCAGGATGATTATGTCCTAGGCGTGGTTTCTGGAAGTCCATGCATTCTTGGAAATGGTGATTGTGATGTATGGAATGGAAGGCTCATAAGGGATGACTTCAGGAGAGTAATCATGGAAGAGGACAGCGATGGAGGTCATGCAAAGATAAATCCGGAATATGACAATACACGTAATTATAAAAACAGAGCAGACAGACCTGAATGGTCAGCGGTAGGAATGCTTGGAATTCTACCCGTCAGACAGGATGGAACCCTTAAGGTGAACGGCTATGCCACTGTAAATCTTGATGGAATGGCAACTGAGTGTGACAGATCAGTCAAAAACGCCTACAGGGTAATAAATATAAAATCTGCGGAAGTCGCAGAAATAATTTTTCGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e9fe0005e332f3ce59ffedaafe272fd9700b52965b6fa9b7aac3a48813d9fbe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7864
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50