Protein

View in Explore
Genbank accession
YP_010658488.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSQLPLDQAIPRFKENEERIDKFVNGTDLEVWTPEVGAPLPTIAKFLKDKEAEIDLANTGIMAEAIAAKEAAELAATNAATQVTLATAAKDAALQAETNAEAAEASASASAASASAAAQTEITNRIASQEEAEAGVNNTELMTPLRTKQQVDISVEEAVDTAIGPAVDSAVATALVPINSSLALLTLKHGVTYWDLAKTLVGNGTTNDTAAFLAALNAAKLAGIKLIISSNPNHKYKIIEAEIPGSFEFYMYGASFVADYNTLYANTCATIMKTSTEGNHYDITIRDAVIDGQSTGSQNASGAGNRPLLFFKGGNIELDKCIVQKGANRGSFSGTTYMDGLQGEVQFNNPREVYIHDCIFQHSPGEQIHILSDKSSAVQQPLVRIERCKFIKERQDQAGEYWSSSSVVIYKPSKTSYITDCDFETHIKSAINWFGAGLVQNCRFHGVKDSQAIDFDEAGAFGIDQIVVRGCSIHNVLGGYPIRISGRNVIVEDCDINRCQNGIYIETQGTTDAMFTGVGVTSPRSLYNVFLKNITGNGNEVPGAEAEVLQNASFGATGGWTVPSPWVISGGQATRTGGSAGNMYADVSGIAAGETATLSVAIASSSHALKMAFYDAAGVALGVETAFFTGAGTFEEEVIVPANAARLYFIASTSSLSCVLDWASCISRKTVTNTFIKILGLSSTAPAVVHVEGVGNHQHSTGGNFPSANEEYGIDAENCYLFLKGALSHGATSMIRMKGYAKFKAQDCRFFLQNAMNLLTFDGATIRDAVFEDCETTESSWTGKHVVNLNTPTWSGRLYRNRAGDIDTTDTGIPFTTNYTTTGTT
Physico‐chemical
properties
protein length:825 AA
molecular weight: 87899,28130 Da
isoelectric point:4,95707
aromaticity:0,08121
hydropathy:-0,09794

Domains

Domains [InterPro]
DC_1322
ATT
1–227
DC_1322 IPR039448 DC_1941
IPR012334
STR
200–573
IPR012334
IPR011050
STR
201–539
IPR011050
YP_010658488.1
1 825
Architecture
ATT
STR
RBD
ATT 1-227 | STR 228-573 | RBD 640-825
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010658488.1
1 825
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,9920
Central domain 206 543 339 0,9928
C-terminal 544 825 281 0,4372
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-543
C-terminal
544-825

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_X2_28B
[NCBI] 		2836086 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010658488.1 [NCBI]
Genbank nucleotide accession
NC_070857 [NCBI]
CDS location
range 64556 -> 67033
strand -
CDS
ATGTCTCAACTTCCTCTGGATCAAGCTATTCCACGCTTTAAGGAGAATGAAGAACGGATTGATAAGTTCGTCAATGGAACTGATCTTGAAGTTTGGACTCCTGAAGTGGGTGCTCCACTTCCTACAATCGCTAAGTTCCTTAAGGATAAGGAAGCTGAGATTGATCTTGCTAACACTGGGATCATGGCAGAAGCAATAGCTGCTAAGGAAGCTGCTGAACTTGCTGCCACTAATGCAGCAACCCAAGTTACATTAGCAACTGCTGCCAAAGATGCAGCACTTCAAGCTGAGACAAATGCTGAAGCAGCAGAAGCATCTGCTAGTGCTAGTGCAGCTTCTGCCAGTGCGGCGGCTCAGACTGAAATTACGAACAGAATTGCTTCCCAAGAAGAAGCTGAAGCTGGTGTCAATAATACCGAGCTTATGACTCCATTGCGTACAAAACAGCAGGTAGACATTTCAGTTGAAGAAGCTGTAGATACTGCTATAGGTCCGGCAGTTGATTCTGCTGTTGCTACGGCACTGGTTCCTATTAACTCCAGTTTAGCTCTTTTGACTTTGAAACATGGAGTAACCTATTGGGATCTTGCTAAAACTCTTGTTGGTAACGGCACTACTAATGATACAGCAGCGTTTCTTGCTGCCCTTAATGCTGCAAAACTTGCTGGTATTAAGCTGATCATCTCATCTAATCCAAATCATAAATACAAGATTATTGAAGCTGAGATTCCTGGTTCTTTTGAATTCTATATGTATGGTGCGAGTTTTGTAGCTGACTACAATACCCTCTATGCCAATACCTGTGCGACTATTATGAAAACAAGCACAGAAGGAAACCATTACGATATTACTATTCGTGATGCTGTGATCGATGGTCAGAGTACTGGATCTCAGAATGCTTCGGGAGCAGGCAATAGACCTCTTTTGTTTTTCAAAGGCGGAAATATTGAACTGGATAAATGTATCGTTCAAAAAGGTGCTAACAGAGGTTCATTCTCTGGTACTACCTACATGGATGGTTTGCAGGGGGAAGTACAATTTAACAATCCCAGAGAAGTCTACATTCATGACTGTATCTTCCAGCATAGTCCTGGCGAACAGATCCATATTCTGAGTGATAAATCTTCCGCAGTTCAACAACCGCTGGTGAGGATTGAACGCTGTAAATTTATTAAAGAACGTCAAGATCAAGCTGGAGAGTATTGGTCAAGTTCGTCTGTGGTTATCTACAAACCATCTAAGACCAGCTATATTACCGACTGCGATTTTGAAACTCATATCAAATCTGCGATCAATTGGTTTGGTGCTGGTCTTGTTCAGAACTGCCGATTCCATGGAGTAAAGGATAGTCAAGCAATCGACTTCGATGAAGCAGGTGCTTTCGGTATTGACCAAATCGTTGTTCGTGGTTGCTCTATCCATAACGTTCTTGGTGGTTACCCAATCCGAATTTCTGGTCGAAATGTGATTGTTGAAGATTGCGATATTAATCGTTGTCAAAATGGTATCTACATTGAAACCCAAGGAACAACTGATGCAATGTTTACCGGTGTCGGTGTTACTTCACCACGCAGCCTCTACAATGTGTTTCTGAAGAACATCACAGGCAATGGTAATGAGGTTCCTGGTGCAGAAGCTGAGGTACTTCAGAACGCTAGCTTCGGTGCAACTGGTGGATGGACAGTACCATCCCCTTGGGTAATTTCTGGTGGACAAGCCACTAGGACAGGTGGTTCCGCAGGTAATATGTATGCAGATGTTTCTGGTATTGCAGCAGGAGAGACGGCAACATTGAGTGTTGCTATCGCGTCCAGTTCACATGCACTTAAGATGGCATTTTATGATGCAGCAGGTGTTGCATTGGGTGTGGAAACTGCATTCTTTACTGGAGCAGGAACATTTGAAGAAGAAGTCATTGTACCTGCAAATGCTGCTCGCCTATATTTCATTGCTTCCACATCATCTCTTAGCTGTGTACTGGATTGGGCATCCTGTATCTCCCGTAAGACGGTAACCAATACGTTCATTAAAATACTTGGCTTGAGTTCGACTGCACCTGCTGTCGTACATGTTGAAGGTGTTGGTAACCATCAACATAGCACTGGTGGTAACTTCCCAAGTGCTAATGAAGAATATGGTATCGATGCTGAGAATTGCTATCTCTTTCTCAAGGGAGCACTTTCTCATGGTGCCACCTCAATGATTCGTATGAAAGGTTATGCAAAGTTCAAAGCTCAAGATTGCCGCTTCTTCCTACAAAATGCGATGAATCTTCTAACCTTTGATGGAGCTACCATTAGGGATGCTGTGTTTGAGGATTGTGAAACTACTGAGAGTTCATGGACCGGTAAACATGTAGTCAATCTCAATACGCCTACATGGTCAGGTAGACTCTATAGGAATCGTGCAGGTGATATTGATACCACAGACACAGGTATCCCTTTCACAACGAACTATACAACTACAGGGACAACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d5f012164989126c26f984021a7180d1c26b095cf40bc337697142d0e68cb30b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7128
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity and Expansion of Phages in the Symbiotic Bacteria Rhizobium Gonzalez,V., Santamaria,R.I., Bustos,P., Cauwenberghe,J. and Juarez,S. 2017-09-25 — GenBank