Protein

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Genbank accession
YP_007236083.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MADLSRIKFKRSSVAGKRPLPADIAEGELAINLKDRMLFTKDDQNLIIDLGFANGGNVDGDIVHKGKYTQTGDYVQTGNLTTSGDINSKTITTSSDIVCNGAATFNQQVLPKADITIQNDTKIIWSRNSDYASISFKNTSDDDTDSYMKFVAGDNGNECFKFFSAGSGGGETLWATVNSGQVIPANYGNFDTRYQNIFNLGANRNLNSVTEVGEYAQHSDANTSTALNYPETLAGHLTVSAGAGIQQRYHVYNSSRIWTRAQHYTGAWTPWLRQLDTDFIETRTTQIKTSVADGIKLWNGQYGMILRRSEDNFYLIPTAAGQAENGGIGSLRPFIINCANGDVQMSHNVYVGGTLSAGSVVSAPTLRGNSIQKTDGTAFIAADGNIYLVGATHGFSAGWLFQQLNSRFDTAQTAATNAQTAANNAQSTANTANATANAAARWVNWGTSYNFGILNQTPNQRIIDKGWFLVGLAAAGQNNNTINLIGGRIQVWNNNSGWVDSAT
Physico‐chemical
properties
protein length:503 AA
molecular weight: 54270,17580 Da
isoelectric point:5,99006
aromaticity:0,09543
hydropathy:-0,35845

Domains

Domains [InterPro]
DC_2291
ATT
1–168
DC_2291 cd19958 DC_1834
cd19958
STR
200–275
cd19958
YP_007236083.1
1 503
Architecture
ATT
STR
STR
ATT 1-168 | STR 199-275 | STR 401-503
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR1-RT
[NCBI] 		1206558 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tegunavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236083.1 [NCBI]
Genbank nucleotide accession
NC_019909 [NCBI]
CDS location
range 160652 -> 162163
strand +
CDS
ATGGCCGATTTATCAAGAATTAAATTTAAACGCTCTTCTGTCGCAGGTAAACGTCCACTACCTGCCGATATCGCTGAAGGCGAATTAGCGATTAACTTAAAAGATCGTATGCTCTTTACAAAAGATGACCAAAATCTAATTATTGACCTTGGCTTTGCTAATGGTGGTAATGTCGATGGTGATATAGTACATAAAGGAAAATATACTCAAACTGGTGATTATGTTCAAACCGGGAACTTAACAACTTCTGGCGATATTAACTCTAAAACAATTACTACATCTAGTGATATTGTTTGTAATGGAGCAGCTACATTTAATCAACAAGTGCTGCCTAAAGCCGATATAACAATTCAGAACGATACTAAGATTATATGGTCTCGTAATTCAGATTATGCTTCTATTAGTTTTAAAAACACATCTGATGACGATACAGATTCGTATATGAAATTCGTTGCAGGCGATAACGGTAATGAATGCTTCAAGTTCTTTAGTGCAGGTTCTGGTGGTGGAGAAACATTATGGGCTACTGTTAATTCAGGTCAAGTAATTCCAGCTAACTATGGTAACTTCGACACAAGATATCAAAATATTTTTAATTTAGGCGCGAACAGAAACTTAAACTCTGTCACTGAAGTTGGCGAATATGCACAACACTCTGACGCTAACACTAGCACTGCTTTGAACTATCCAGAAACACTAGCAGGACATTTAACTGTTAGTGCTGGTGCAGGTATACAACAACGCTACCACGTTTATAACTCAAGTCGTATTTGGACTCGTGCTCAACATTACACAGGAGCATGGACCCCGTGGTTAAGACAATTAGATACAGACTTTATAGAAACAAGAACTACTCAAATTAAAACATCTGTGGCGGATGGTATTAAACTTTGGAATGGCCAGTACGGTATGATTCTACGCAGGTCAGAAGATAACTTTTATCTGATTCCTACTGCAGCAGGACAAGCAGAAAATGGCGGTATTGGCAGTTTAAGACCTTTCATTATTAACTGTGCTAATGGCGATGTGCAAATGAGTCATAATGTTTATGTTGGTGGTACGCTGAGCGCTGGTTCGGTTGTTTCTGCTCCTACATTACGTGGTAATTCCATACAAAAAACAGATGGTACTGCTTTTATCGCAGCTGATGGCAACATCTATTTGGTTGGTGCAACACATGGATTCTCTGCTGGATGGTTGTTTCAACAACTTAATAGTCGTTTTGATACAGCACAAACCGCCGCCACTAATGCGCAAACTGCCGCAAACAATGCGCAAAGTACGGCGAACACGGCTAACGCAACTGCTAATGCTGCTGCTCGTTGGGTGAATTGGGGTACATCATATAACTTTGGGATATTGAACCAGACTCCAAACCAACGTATCATTGATAAAGGGTGGTTCTTGGTTGGTCTAGCGGCCGCCGGACAAAATAATAACACTATAAACCTTATCGGTGGTCGTATTCAGGTTTGGAATAATAACAGTGGTTGGGTTGATTCAGCAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
93648a9ed16f16d726cb3b448502bbff7a3496ef2839c74a4082a2a892ea858b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7462
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank