Protein

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Genbank accession
XWX36028.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MAGDRWVKVIKPNKSDILLTDIPGLHFLEWNIPSPVANSQELELTGIDGVLPSRNTYGAFDLELLFYFAGTDSKDLNLFSQRMKSLVNERDPFYIVHSDMPRFKYAVNSAEIEYDKITVADMNFTIKFHCYKGYAESLYSTKHYSLSDDNWQFQSGLVTDEEIKYTFHSNGFKVFNGGDDEINPLYRHNLKIYINVDAPNGFTIRNKTNGTSLTYKGSIKKNRTFVINGIYSIIDNKRVGKDTDYGIITLEQGYNDIEIDGTSIGSAKCRFDFNFIYR
Physico‐chemical
properties
protein length:278 AA
molecular weight: 31878,45660 Da
isoelectric point:5,71484
aromaticity:0,13669
hydropathy:-0,42518

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
17–135
G3DSA:2.40.30.200 DC_0197
IPR008841
STR
36–130
IPR008841
XWX36028.1
1 278
Architecture
ATT
STR
ATT 17-135 | STR 136-278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX36028.1
1 278
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,7195
Central domain 195 267 74 0,1372
C-terminal 268 278 10 0,7318
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-267
C-terminal
268-278

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_88
[NCBI] 		2815640 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX36028.1 [NCBI]
Genbank nucleotide accession
MZ417348 [NCBI]
CDS location
range 90764 -> 91600
strand +
CDS
ATGGCAGGAGATAGATGGGTAAAGGTAATTAAGCCTAATAAAAGTGATATTTTATTAACAGACATTCCAGGTCTCCATTTTCTGGAATGGAATATCCCATCTCCTGTTGCTAATTCACAAGAACTAGAATTAACAGGCATTGATGGTGTTCTTCCTAGTAGGAACACCTACGGTGCTTTTGATTTAGAATTGTTATTTTATTTTGCTGGAACAGATTCTAAAGATTTGAATTTGTTCTCTCAAAGAATGAAAAGTCTAGTAAATGAGAGAGACCCTTTTTATATAGTTCATTCTGATATGCCTAGATTTAAATATGCTGTAAATTCAGCTGAAATAGAATATGATAAAATAACAGTAGCAGATATGAATTTCACAATTAAATTTCATTGCTATAAAGGATATGCAGAATCTTTGTACAGTACAAAACATTATAGTCTATCAGATGATAATTGGCAATTCCAAAGTGGATTAGTAACTGATGAGGAGATTAAATATACTTTCCATTCAAATGGATTTAAAGTCTTTAATGGTGGAGACGATGAAATTAACCCACTATATAGACATAATTTAAAAATATATATCAATGTAGATGCCCCAAACGGTTTTACTATTAGAAATAAAACAAACGGGACTTCTTTAACTTATAAAGGAAGTATTAAAAAGAATAGAACTTTTGTTATAAATGGAATTTATTCTATTATAGATAATAAAAGAGTTGGAAAAGATACTGATTACGGTATTATTACTTTAGAACAAGGATATAATGATATTGAAATAGATGGAACTTCAATAGGTTCAGCAAAATGTAGATTTGATTTTAACTTTATTTATAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9edcf491459eb36c0db2abd933fbecc1e7876482d5f98b426a849909db7c0606
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank