Protein

View in Explore
Genbank accession
YP_010669919.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MPLIGAQGPGSNIAWRGNLDEYPDAFSFVEVTEVFPGAAATCSPVTITGINYKALLTANLNTPAFAIDAGIGASVRVTPYIEETDSYGPAGEFLPGNDPNNPIIIRNKDKIELEVLTLAPGIVGRSAFAVGYGIGVTIGTRPGVEWFARTRDLDDDPDPFDFTDLSNLEINTLTVSDTVTITGIDDTIGVDIFIVGTGELRINGTGSWVQTAKIFDGDTLQLRNTTSNFYSTTVETVVQLGIFQANWNITTRAADTTINDFTFTDVINADINTIHESNTVTISGADDNLNGNNPLPLSFSGNGQYRITRGGAVVQEYTNSSSNTCNNGDVIQLKQTASGSYSTKTDATLTVANQSDTYSVTTRPRPIDTIPDQFTFTDQTGVLRNEIIYSNIITLSGMTAFGDEGTATINGTSGSNAQYKVVRGGSIVRNWTSGSFAVQLGDKIQLRLLSATDSLGSRDATFTVSGTNTFTNIGGVAGSTSDTWRVTSKARDCAINSFSLPNIPEGSSTLNPGDLASTEFTIGGGFEFDCNVSATTSNSNSYLKKKGTTQQGTTLTDLKQGDVVQVFMTTPYYCSTRTTTVSLSAAFTTSGSARSANWTISPKAPPKPTLSLTASPINPAFVFPDGGSSTLTYEYTHVTNSSVTTNFGVSSVPVTTLGDQTKNGSKGVSSLPSGTNKFTMTVSNCTGSTSDSVSVIVGTPPAPTLFFCVNQSATSSCPTSINIARGSSVTFYWSSTNAIKVEATQGTGFSTGNKQSGNDTATPSSDGEVYTAKATGAGASPQTVSKSITVRFSPSVTLTASPKNVITGNSTKLTWTSSDADRVTASSGPSFSGITALNGDKTITMNSSGTYTWSITVKDDGTNTTAKASASVTVTDDTTVDSFKMDPESRSNQNLGSSSESQPKFTSSPTGSVHGLSPGISVTANVSGGGAKFTDGNTSKTVKNGTSCSSLRIKMNASNSYSTSKTATLNIGGVSKTYKVTTKACVVENGTYSLDGMTLNTRRLLPTNAMCVRGGSGSGNTGGKREQTSTGGNTYGAGSSNWTAPTGTSSVTAKVIGAGGGGGKGDGKACGNKSNKKGCGGGGGGGGGASVVNWNQAESGDTFAIRIGSGGAGKSGNEGSGSSGGNSYIEINGARTKSRVTANGGSGGGGGSKSSPGGAKGNGNVCNGRNGGDRRGDEGGHGGGAGRTSTTSACSSGVADPGSQPCDQGGPGQGSNVSGSCNGSNRQEKGTKEGASGHKYGGGGSGGGCGNGGGRGADGRGRIEWTISYAKYSKISVAKKINQAYWDDIGRAATGAEIKTWYNRFKDDPATYPTIDTLYTKVKQGISGSTSNPRDNCGGSFPKWV
Physico‐chemical
properties
protein length:1345 AA
molecular weight: 137944,34730 Da
isoelectric point:7,67965
aromaticity:0,06840
hydropathy:-0,38379

Domains

Domains [InterPro]
DC_0346
STR
16–526
DC_0346 DC_2069 IPR049304
DC_2052
STR
945–1204
DC_2052
YP_010669919.1
1 1345
Architecture
STR
STR
STR 16-526 | STR 698-1265 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669919.1
1 1345
Domain Start End Length (AA) Confidence
N-terminal 1 614 614 0,8254
Central domain 615 813 200 0,3363
C-terminal 814 1345 531 0,7044
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-614
Central
615-813
C-terminal
814-1345

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Uroviricota > Caudoviricetes > Pantevenvirales > Zhoulongquanvirus > Zhoulongquanvirus esscess
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669919.1 [NCBI]
Genbank nucleotide accession
NC_070962.1 [NCBI]
CDS location
range 182327 -> 186364
strand +
CDS
ATGCCTTTAATTGGTGCTCAGGGTCCTGGATCTAATATTGCATGGAGAGGTAATCTGGATGAATATCCAGATGCATTTAGTTTTGTAGAAGTTACTGAAGTATTTCCAGGAGCAGCTGCAACATGTTCTCCAGTAACTATTACTGGTATTAACTATAAAGCACTATTAACTGCAAATTTAAATACACCAGCATTTGCAATTGATGCTGGTATTGGAGCCTCAGTTAGAGTTACTCCATATATTGAAGAAACTGATTCATATGGACCTGCAGGTGAGTTTTTACCTGGAAATGATCCAAATAATCCGATTATTATCCGTAATAAGGACAAAATTGAACTCGAAGTACTTACTCTAGCACCAGGTATAGTCGGTAGATCTGCATTTGCTGTAGGATATGGAATTGGAGTTACTATAGGTACAAGACCTGGAGTAGAATGGTTTGCTAGAACAAGAGATCTTGATGATGATCCAGATCCATTCGATTTCACCGATTTATCTAATTTAGAAATTAATACTCTAACCGTTAGTGATACCGTAACTATTACTGGTATTGATGATACGATTGGTGTAGACATTTTTATTGTAGGTACTGGAGAATTACGCATAAATGGAACTGGGTCTTGGGTTCAGACCGCAAAGATTTTTGATGGAGATACTTTACAATTAAGAAATACAACATCAAACTTTTACTCTACAACAGTAGAAACAGTTGTTCAACTTGGTATTTTCCAAGCTAATTGGAATATTACAACTAGAGCAGCAGACACTACAATTAATGACTTCACGTTTACTGATGTTATTAATGCAGACATCAATACAATTCACGAAAGTAATACAGTTACTATTAGTGGTGCTGACGATAACTTAAATGGAAACAACCCACTACCTCTTTCTTTTAGTGGTAATGGTCAATACAGAATCACTAGAGGTGGAGCTGTAGTACAAGAATATACAAATTCATCATCAAATACTTGTAACAATGGTGATGTAATTCAGTTAAAGCAAACAGCATCTGGAAGTTATTCTACAAAAACAGATGCAACATTAACCGTTGCAAATCAATCGGATACTTATTCTGTAACAACTCGACCAAGACCGATTGACACAATTCCAGATCAATTTACTTTTACTGATCAAACTGGAGTACTTAGAAATGAAATAATTTATAGTAATATAATTACCTTGTCAGGTATGACTGCTTTTGGTGATGAAGGCACTGCAACTATCAATGGAACTAGTGGATCAAATGCACAATACAAAGTCGTCAGGGGTGGTTCGATAGTACGAAATTGGACTAGTGGATCATTTGCAGTTCAACTAGGTGATAAAATTCAATTAAGATTATTATCAGCAACAGACTCTTTAGGATCAAGAGATGCTACCTTTACTGTATCTGGAACAAATACATTTACTAATATTGGTGGAGTTGCTGGGTCTACATCAGATACTTGGAGAGTAACATCAAAAGCAAGAGATTGTGCTATTAATTCATTTAGTTTACCAAATATACCAGAAGGATCTTCAACATTAAACCCTGGTGATTTGGCTTCCACTGAATTTACAATTGGTGGTGGTTTTGAATTTGACTGTAATGTCTCTGCTACTACTAGCAATAGTAACTCATATCTTAAGAAAAAAGGAACTACTCAACAAGGTACAACATTAACTGATTTAAAACAAGGTGATGTTGTTCAAGTCTTTATGACAACTCCATATTATTGTAGTACTAGAACTACAACTGTATCTCTATCTGCAGCATTTACAACATCTGGATCAGCAAGATCTGCTAATTGGACAATATCACCAAAAGCACCACCCAAACCAACATTAAGTTTAACAGCAAGTCCAATCAATCCAGCATTCGTTTTCCCTGATGGTGGATCATCTACTTTAACTTATGAATATACTCATGTAACAAACTCCTCAGTTACTACAAACTTTGGTGTATCATCAGTTCCTGTCACAACTCTTGGTGATCAGACAAAGAATGGATCTAAAGGTGTATCAAGTCTTCCAAGTGGAACAAATAAATTTACTATGACAGTTTCTAACTGTACTGGAAGTACATCAGATTCTGTTAGTGTCATTGTCGGAACTCCACCTGCACCAACACTATTTTTCTGTGTCAATCAATCAGCAACATCTTCTTGTCCAACCTCAATTAATATTGCAAGAGGATCATCAGTTACATTCTATTGGAGTTCAACTAATGCTATAAAAGTTGAAGCTACTCAAGGAACTGGATTTAGTACTGGAAACAAACAATCTGGAAATGATACTGCTACACCATCTTCAGATGGTGAGGTTTACACTGCAAAAGCAACTGGTGCTGGAGCTTCTCCGCAAACAGTATCGAAATCAATTACAGTAAGATTTTCTCCTTCAGTAACTCTTACTGCATCTCCTAAAAATGTAATTACTGGCAATAGCACAAAACTTACTTGGACTTCTTCTGATGCTGACAGAGTAACTGCTAGTAGTGGACCAAGTTTTTCTGGAATTACTGCTTTAAATGGCGACAAAACCATTACCATGAATTCTAGTGGTACTTACACTTGGTCTATTACTGTAAAAGATGATGGAACTAACACCACTGCTAAAGCATCTGCAAGTGTAACTGTTACAGACGACACTACTGTAGATAGTTTTAAGATGGATCCAGAATCCAGATCTAATCAAAATCTTGGTTCTTCTAGTGAATCACAACCAAAATTTACATCATCTCCAACAGGATCTGTTCATGGTTTATCACCAGGAATAAGTGTAACTGCAAATGTGAGTGGTGGTGGAGCTAAATTTACTGACGGAAATACAAGTAAGACAGTAAAAAATGGAACATCATGTTCTAGTTTGAGAATTAAGATGAATGCATCTAATTCATATTCAACTTCAAAAACTGCTACTTTAAATATTGGTGGAGTTTCAAAAACTTATAAAGTAACGACAAAAGCATGTGTTGTTGAAAACGGTACATATTCTCTTGATGGTATGACACTGAATACCAGAAGATTGTTGCCAACTAATGCTATGTGTGTAAGAGGTGGATCTGGTTCTGGAAATACTGGAGGAAAAAGAGAGCAAACTAGTACTGGTGGAAATACTTATGGAGCAGGATCTTCTAACTGGACAGCACCAACTGGAACTTCATCAGTAACTGCAAAAGTTATTGGAGCAGGTGGTGGCGGTGGTAAAGGTGATGGCAAGGCATGTGGGAACAAGAGTAATAAGAAAGGATGTGGTGGTGGAGGAGGTGGAGGTGGTGGTGCCTCCGTAGTCAATTGGAATCAAGCAGAATCTGGAGATACTTTTGCAATTAGAATTGGTAGTGGTGGTGCTGGAAAAAGTGGAAATGAAGGATCAGGTTCTTCTGGTGGTAACTCATACATTGAAATAAATGGAGCTCGTACTAAATCAAGAGTAACAGCCAATGGTGGTTCAGGAGGAGGTGGAGGTTCAAAAAGCTCTCCTGGTGGTGCTAAAGGAAATGGAAACGTTTGTAATGGTCGCAATGGTGGTGACAGACGTGGTGATGAAGGTGGTCATGGTGGAGGAGCAGGAAGAACTAGCACTACCTCCGCATGTTCTAGTGGTGTAGCAGACCCTGGATCTCAACCATGTGATCAGGGTGGACCAGGACAAGGATCTAATGTTTCTGGAAGTTGTAATGGGTCTAACAGACAAGAAAAAGGAACAAAGGAAGGTGCTAGCGGACACAAATATGGTGGTGGAGGATCAGGTGGTGGATGCGGTAATGGTGGAGGAAGAGGTGCTGATGGAAGAGGAAGAATTGAATGGACAATTTCCTATGCTAAGTATTCAAAAATTTCTGTTGCCAAAAAAATCAATCAAGCATATTGGGATGACATTGGTAGAGCTGCAACTGGAGCAGAAATAAAAACTTGGTATAATAGATTTAAGGATGACCCAGCAACTTATCCGACAATAGATACTCTTTACACTAAAGTTAAACAAGGTATAAGTGGAAGCACTAGTAATCCAAGAGATAATTGTGGTGGTTCGTTCCCCAAATGGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f52debefab3f94c0fad4b9955f39d045f28132cbe90ec5f120d819cce17d600e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6850
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank