Protein

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Genbank accession
YP_009817643.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,73
Protein sequence
MLRVVGTIVPPVEGGVLEHVTMLVQCIKSSVITLENSFSPVTCDDTGGYDFILREGIYRIYIKYSTNTPTISLGTCGVVEGMPAELDLNNLLTNYTPQVPDYIQELDDKWEDTWQDFINDNNTQHANINNSVSAGDAKVVEDMSVYINEVTGQQGASLREEISAGDAGVYNESRAYTDSLGVQVALDITQVANDVSTVSQQLTAYKDENGNTFDEIDNRITTNENELSSTISAQVESETGAMQLRIEDLITTGNAEISQSISVIEDALGATQAAWQIVATVDDLTSAIGMTNNGVNSEIFMQANALKFVDPSDPTLATDPVFQIENQEVFMRSAFIKELGATTVTTDELTSTNYDSNTGFKLHASGLAEFQNINAKGHINATSGSFKGHLEATSGYINNLTANNVTIQEDCTILGTTTAKNLIGDVSSGSIKSFTERYISSGGTNSTNLVSFNVDNTLSGRNCLVTFSGITCRVTASNNADTAQKVYVEFRIMEGGTERRSAIMELDVLQKGSTYPSTAEGVVALPTIGYVFGQSSKTLTANVHIYTSNASTSGGATIFAGTVTCSKLRQDGTVT
Physico‐chemical
properties
protein length:575 AA
molecular weight: 61653,42720 Da
isoelectric point:4,30882
aromaticity:0,06609
hydropathy:-0,16922

Domains

Domains [InterPro]
DC_1904
RBD
78–569
DC_1904
IPR015406
RBD
257–385
IPR015406
YP_009817643.1
1 575
Architecture
RBD
RBD 78-569 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009817643.1
1 575
Domain Start End Length (AA) Confidence
N-terminal 1 386 386 0,9086
Central domain 387 564 179 0,0290
C-terminal 565 575 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-386
Central
387-564
C-terminal
565-575

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.224.A._10N.261.48.B1
[NCBI] 		1881226 No lineage information
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009817643.1 [NCBI]
Genbank nucleotide accession
NC_048124.1 [NCBI]
CDS location
range 26367 -> 28094
strand +
CDS
ATGTTACGTGTTGTAGGGACAATAGTTCCACCAGTGGAAGGGGGAGTGCTAGAGCATGTGACCATGCTTGTCCAATGTATCAAATCTAGCGTTATCACTCTTGAAAACAGTTTCTCTCCCGTTACCTGTGATGACACAGGAGGCTATGACTTTATCCTCCGTGAAGGTATCTATCGAATCTATATTAAATACTCCACTAACACCCCAACTATTTCCTTGGGTACGTGTGGTGTAGTTGAAGGTATGCCTGCTGAGCTTGACCTGAATAACCTCCTAACCAATTACACTCCACAAGTCCCTGACTATATCCAAGAGTTAGATGATAAATGGGAAGACACTTGGCAAGATTTCATCAATGACAACAACACTCAACATGCCAACATAAATAACTCTGTATCGGCAGGTGACGCTAAAGTTGTTGAAGACATGAGTGTTTACATCAATGAAGTCACAGGACAGCAAGGAGCGTCTCTCAGGGAGGAAATATCAGCAGGTGATGCAGGTGTTTACAATGAGAGCAGAGCATACACTGATTCGCTAGGCGTACAAGTTGCTCTGGATATCACGCAAGTAGCTAATGATGTGTCTACGGTATCTCAACAACTTACAGCATACAAAGATGAGAATGGTAACACCTTTGATGAGATTGATAACCGTATCACTACTAATGAGAATGAGCTTAGTTCTACCATTTCTGCTCAAGTAGAATCAGAGACAGGAGCAATGCAGTTACGCATTGAAGATTTGATTACCACTGGCAATGCCGAAATTTCTCAAAGCATCTCTGTTATTGAAGATGCCCTAGGGGCAACTCAAGCAGCATGGCAAATCGTAGCTACGGTAGATGACCTAACCTCTGCAATTGGTATGACGAATAATGGGGTTAACTCTGAAATCTTCATGCAAGCAAATGCTCTGAAGTTTGTTGACCCTAGTGACCCTACCTTGGCTACTGACCCTGTATTCCAGATTGAGAACCAAGAAGTCTTCATGCGAAGTGCTTTCATCAAGGAGCTTGGGGCAACCACAGTTACAACAGATGAGTTAACCTCTACCAATTATGACAGTAACACAGGTTTCAAACTCCACGCTTCAGGGCTTGCAGAGTTCCAGAACATAAATGCCAAAGGGCATATTAATGCTACTAGTGGTAGTTTTAAGGGACACCTAGAGGCAACCAGTGGCTACATAAATAACCTAACAGCGAATAATGTCACCATTCAGGAAGACTGTACTATTTTAGGTACCACTACTGCTAAGAATCTCATAGGAGACGTATCTTCAGGTTCCATTAAATCATTTACTGAGAGGTATATATCTTCAGGAGGAACGAACAGTACTAACCTTGTTTCATTTAATGTGGATAACACCCTGTCCGGTAGAAACTGTTTGGTGACGTTTTCAGGGATTACATGTCGAGTAACTGCATCAAATAATGCCGATACTGCACAAAAGGTCTATGTAGAGTTTCGTATAATGGAAGGTGGTACAGAAAGGCGTTCTGCAATAATGGAACTTGATGTATTACAAAAGGGTTCCACCTACCCTTCCACAGCAGAAGGGGTTGTAGCGTTACCTACTATCGGATATGTATTTGGACAATCAAGTAAAACATTAACAGCTAACGTCCATATTTATACAAGTAATGCGAGTACCTCAGGTGGTGCAACTATTTTTGCAGGCACCGTAACCTGCTCGAAACTCAGACAAGATGGCACTGTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab9ed12c3a9174b70437080b322b274b8041b8e345f355d4d163f15dce47b68c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6579
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank