Protein

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Genbank accession
YP_010660694.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPYTQYDLASLNYTQSADVMTFAQPGYKPRELNRLAHDNWTTADINLAPRIAAPASATAVSGGGTGTAQTWRYQVTAVLDDGNTLDESLPATSNPVTTHTDVASATITWSAVTGATYYIIYKDNAGAGIYGFIGRATGTTFTDQNITAVKTDTPPNGNDPFVGAGNFPGAVVYYQQRLIFAGSNLQPQTVWTSKTGLFKNFGYSVPNKDDDAITFTLSSNKVNRVRHLLGLRKLLALTTGAEFTISGGDTGLSAKTVQAVPEGYDGTAIVPPVVVGNSAVYVQARGNRVSSFGYSLNADGFAADDLTLFSAHLFKGKELTNVAYQKVPDSIVWYVRDDGVLLGLTYVPEQQLVGWHWHDTDGFVESIACIPEGQEDVLYMVVRRNINGVQKRYIERMESRQITSIEDAFFVDCGLTYDGRNTDAAKTFTLSGGTTWQFPEVVAMTAVGHTPFAAGSVGVDYSLKRQVIDENGDPATEIVRVEVVGYTSPSVVTVKLLIICPVSLRGVAVSAWARQVKTLSGLGHLEGKTVSILADGSVHPQRVVTGGSVALQEAAGIAHVGLQYISDMETLDLELKNANETVLDKKISVTGLTVRVEESRGIFAGKDKKNLYEHKTDRDDYESPIELLTGQADIPISNDWQGKGRVFIRQSDPLPLTVLAVIPEVTIGGR
Physico‐chemical
properties
protein length:670 AA
molecular weight: 72246,29250 Da
isoelectric point:5,22478
aromaticity:0,08657
hydropathy:-0,11761

Domains

Domains [InterPro]
IPR013783
STR
88–192
IPR013783 DC_1984
DC_0058
STR
135–499
DC_0058
YP_010660694.1
1 670
Architecture
STR
RBD
STR 88-499 | RBD 504-669 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010660694.1
1 670
Domain Start End Length (AA) Confidence
N-terminal 1 416 416 0,9042
Central domain 417 615 200 0,1827
C-terminal 616 670 54 0,0930
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-416
Central
417-615
C-terminal
616-670

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage UFJF_PfDIW6
[NCBI] 		2927622 Uroviricota > Caudoviricetes > Purivirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010660694.1 [NCBI]
Genbank nucleotide accession
NC_070881 [NCBI]
CDS location
range 8019 -> 10031
strand +
CDS
ATGCCGTACACGCAATATGACCTGGCATCCCTGAATTACACCCAGTCTGCTGACGTGATGACGTTCGCGCAGCCAGGATACAAGCCGCGTGAACTGAACCGCTTGGCCCACGACAACTGGACCACCGCCGATATCAACCTGGCCCCGCGCATTGCCGCTCCGGCATCTGCCACGGCCGTAAGTGGTGGCGGCACTGGCACGGCGCAAACCTGGCGCTACCAGGTCACCGCCGTGCTGGATGACGGCAACACCTTGGATGAGTCCCTGCCTGCCACGTCTAACCCCGTCACGACCCACACAGACGTTGCGTCAGCAACCATCACCTGGTCCGCCGTTACCGGTGCGACGTACTACATCATCTACAAGGACAACGCCGGCGCCGGGATCTACGGATTCATCGGGCGCGCCACCGGCACCACCTTCACGGACCAGAACATCACGGCCGTCAAGACCGACACACCACCGAACGGCAACGACCCCTTTGTCGGCGCCGGTAACTTCCCGGGCGCCGTGGTGTATTACCAGCAGCGCCTGATATTCGCCGGTAGCAATTTGCAGCCACAGACTGTGTGGACGAGCAAGACCGGCCTTTTCAAGAACTTCGGCTATTCCGTCCCCAACAAGGATGATGACGCTATTACCTTCACCTTGAGCAGCAACAAGGTGAACCGGGTTCGCCATCTGCTGGGGCTGCGTAAGCTGCTGGCGCTCACCACGGGCGCAGAGTTCACCATTTCGGGCGGTGACACAGGTTTGTCGGCAAAGACCGTGCAGGCCGTTCCAGAGGGCTACGACGGCACAGCCATTGTTCCGCCCGTGGTAGTGGGCAACAGCGCCGTGTATGTCCAGGCACGGGGTAACCGGGTTTCATCGTTCGGTTACTCCCTGAATGCCGACGGGTTCGCCGCTGACGACCTGACGCTATTCAGCGCTCACCTGTTCAAGGGCAAGGAACTGACGAACGTTGCTTACCAGAAGGTGCCCGATTCGATTGTCTGGTATGTGCGCGATGACGGTGTGCTGCTGGGCCTGACCTACGTTCCCGAACAGCAATTGGTGGGCTGGCACTGGCACGACACTGACGGCTTCGTCGAGTCGATCGCCTGCATCCCGGAAGGCCAGGAAGATGTGCTGTACATGGTGGTGCGCCGCAACATCAATGGCGTGCAGAAGCGCTACATAGAGCGCATGGAAAGCCGCCAGATAACCAGCATCGAGGACGCTTTCTTTGTTGATTGCGGCCTGACCTATGACGGGCGCAACACCGACGCCGCCAAGACCTTTACCTTGTCCGGTGGCACAACCTGGCAGTTTCCCGAGGTGGTCGCCATGACGGCGGTCGGCCACACCCCATTCGCGGCGGGGAGTGTGGGCGTCGATTACTCGTTGAAGCGCCAGGTGATCGACGAGAACGGCGACCCTGCTACAGAAATTGTCAGGGTTGAGGTGGTCGGCTACACCAGCCCCAGCGTGGTCACGGTCAAGCTGCTGATCATCTGCCCGGTATCGCTTCGCGGTGTGGCCGTATCTGCCTGGGCCCGCCAGGTTAAAACGTTGTCTGGTCTGGGCCATCTGGAAGGCAAGACCGTTTCAATCCTGGCCGATGGCAGCGTGCACCCTCAGCGCGTTGTTACAGGCGGCTCCGTTGCATTGCAGGAAGCCGCAGGCATCGCCCACGTAGGGCTGCAATACATATCCGACATGGAAACCCTCGACCTGGAGCTAAAAAACGCCAATGAGACGGTGCTCGATAAGAAAATCTCTGTCACTGGCCTGACCGTCCGTGTCGAGGAATCGCGGGGCATTTTTGCGGGCAAGGACAAAAAGAACCTGTACGAACACAAGACCGACCGTGACGACTACGAGTCGCCTATTGAGTTACTGACAGGGCAGGCTGACATCCCCATATCAAACGACTGGCAGGGCAAAGGGCGCGTATTTATTCGACAGTCCGATCCGCTGCCGCTGACCGTGCTGGCGGTGATTCCGGAGGTGACCATTGGCGGTCGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a62422aa0c614281eaac95725d84227bbb0f9bb80ca8e03faf53e54f4d261dbb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9206
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of UFJF_PfDIW6: a novel lytic Pseudomonas fluorescens-phage with potential for biocontrol in the dairy industry Hungaro,H.M., Vidigal,P.M.P., Nascimento,E.C., Oliveira,F.G.C., Gontijo,M.T.P. and Lopez,M.E.S. 2022 — GenBank