Protein

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Genbank accession
UYE97296.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MTSPKKITQFTAATTVADEDLLLVVDTNDTTSSADGTTKKATFSTLENNVRAGLNITNWDTAYGWGNHATAGYQTDFTETDPVFTAHVSSGITSTKIGQWDAAYGWGNHAVQGYLQSIAAQSIDALNDVAINTGTLATNQVLKWNGTSWVNGAGGGGTTIDSLNDINGVTVGSPTNNQVLKYNSATSQWTNQAEAGGIALTDFSITTGAASSSPSLTYDSGTGVFTYTPPDLSGLLSDVVNDTTPQLGGNLSLNSHTINGTGNINISGQVKGNFFNFKQNNSTIAGTSGNNRDIKVIGGVPFYYDGTAWREFYLIDGSVTTVQPDTDWDDVLIRSTFDSNINDVKYNVTPTVSNSSVIVVSSPYKVGTGSLRLNDEYIEYPMTSDYSFTGAWTFEAWIYFDNLPDYDSDPFPLFTGNSTTTSKNWGLYVSRASSGGNLMRFSWYNGNTLDKNNPYPNSTEGLLSNSLSGAGFLNAWRHIAISKDSSDGRIRLFIDGAFSGNLIDNDINDPDEIRVGGSEYYSINSDIFVDDLRVTKDTRYTATFTPSSTQLPVSGSTSQIVVTPRVIQGEIDLGSSPTWTGTPGATVAQQSSGNYRLTFATAFSSTSDYIVVAQPMDQSSASYVQATRATTHVDFEIKTQAAAAAVNNGSLAIQILKKA
Physico‐chemical
properties
protein length:659 AA
molecular weight: 70470,05250 Da
isoelectric point:4,43051
aromaticity:0,10167
hydropathy:-0,29833

Domains

Domains [InterPro]
DC_0286
ATT
1–45
DC_0286 DC_1499 IPR013320
DC_1556
RBD
166–380
DC_1556 DC_0994
G3DSA:2.60.120.200
STR
334–543
G3DSA:2.60.120.200
UYE97296.1
1 659
Architecture
ATT
STR
RBD
STR
RBD
ATT 1-45 | STR 79-167 | RBD 168-280 | STR 281-543 | RBD 544-659
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-TIM54
[NCBI] 		1137744 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYE97296.1 [NCBI]
Genbank nucleotide accession
OP053362 [NCBI]
CDS location
range 121350 -> 123329
strand -
CDS
ATGACCTCCCCAAAAAAGATAACTCAATTTACCGCTGCAACTACTGTTGCCGATGAAGATCTACTACTAGTCGTAGATACTAACGACACTACTTCCTCTGCAGACGGAACTACAAAAAAAGCCACTTTTTCTACTTTAGAAAATAACGTTAGGGCGGGGCTTAATATTACCAACTGGGATACAGCGTATGGCTGGGGTAACCACGCCACTGCTGGATACCAAACAGACTTTACAGAGACAGACCCTGTATTTACCGCTCACGTTTCTAGCGGAATTACATCCACAAAAATTGGACAATGGGATGCAGCTTATGGCTGGGGTAATCATGCAGTACAGGGATACCTTCAGTCTATTGCTGCACAAAGCATCGATGCTCTAAATGACGTTGCTATTAACACCGGTACCTTAGCAACAAATCAAGTTCTTAAGTGGAATGGAACTTCTTGGGTTAATGGCGCAGGTGGCGGTGGGACAACAATTGATAGCCTAAATGATATTAACGGAGTTACAGTCGGTTCTCCAACTAACAACCAAGTACTAAAGTACAACTCAGCTACTTCGCAATGGACAAACCAAGCCGAGGCTGGAGGTATTGCATTAACTGATTTTTCTATAACAACAGGAGCAGCGTCTAGTTCCCCTAGCTTGACTTATGATAGCGGAACAGGAGTGTTTACGTATACTCCACCTGATTTGTCTGGTTTACTCTCTGATGTTGTAAATGACACCACACCGCAGCTTGGCGGAAACTTAAGTCTTAATAGCCACACTATTAATGGCACTGGTAACATCAATATCTCTGGGCAAGTTAAAGGCAATTTTTTCAACTTCAAACAAAATAATTCCACTATTGCGGGTACATCTGGAAATAACCGAGACATTAAAGTAATCGGGGGAGTTCCTTTTTATTACGATGGTACCGCTTGGAGGGAATTTTATTTAATAGACGGATCAGTTACAACAGTTCAGCCTGACACCGATTGGGATGACGTATTGATCAGATCTACGTTTGATAGTAACATTAATGATGTAAAATATAATGTAACTCCTACAGTAAGCAACTCTTCAGTAATTGTTGTATCAAGTCCGTATAAGGTTGGGACTGGTTCTTTAAGACTCAACGACGAGTACATTGAGTATCCAATGACGTCGGATTATAGTTTCACCGGCGCTTGGACGTTTGAAGCTTGGATCTATTTTGATAATCTTCCAGACTATGACAGCGACCCCTTTCCTCTATTTACCGGTAATAGTACCACAACTTCTAAAAACTGGGGATTATATGTAAGTAGAGCAAGTTCTGGTGGGAACCTAATGAGATTTTCCTGGTACAATGGAAATACCCTAGATAAAAATAATCCATATCCTAATAGCACCGAAGGACTTTTAAGCAACAGCCTGAGCGGTGCCGGTTTCCTTAATGCGTGGAGACACATAGCGATATCAAAAGATTCCTCAGATGGAAGAATTAGGTTGTTTATTGACGGAGCATTTTCAGGTAATCTTATTGATAACGATATAAATGACCCCGACGAAATTAGAGTTGGTGGCAGTGAGTACTACAGCATAAATTCGGACATATTTGTCGATGATCTAAGAGTAACTAAAGATACAAGGTACACCGCAACCTTTACGCCTTCTTCTACTCAACTTCCTGTCAGCGGCAGTACCTCTCAGATAGTTGTTACTCCTCGTGTTATTCAGGGAGAGATAGATTTAGGATCCTCTCCAACTTGGACAGGCACTCCTGGAGCCACTGTAGCTCAGCAATCTTCTGGCAATTATAGATTAACATTCGCAACTGCTTTTAGCTCTACCTCCGATTACATTGTAGTCGCCCAGCCTATGGACCAGTCTTCAGCATCTTATGTTCAAGCTACTAGAGCCACAACACATGTGGACTTTGAAATTAAAACTCAAGCGGCTGCTGCTGCAGTTAACAACGGATCTCTTGCAATACAAATTCTTAAGAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
48b2f52e7fd829e24815a212a255138b2ae8060c9cd470e606a50c91ffbdd04a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6873
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Widespread yet persistent low abundance of TIM5-like cyanophages in the oceans Baran,N., Carlson,M.C.G., Sabehi,G., Peleg,M., Kondratyeva,K., Pekarski,I. and Lindell,D. — — GenBank